Results 81 to 90 of about 503,920 (237)

Metagenome-assembled genomes have comparable quality to reference genomes.

, 2022
Violin plots showing the quality score, completeness, contamination estimated using checkM, and the log10 N50 from the assembly for the reference genomes and MAGs present in CMMG. (EPS)
Mirko Trajkovski (11579194), Silas Kieser (12213674), Evgeny M. Zdobnov (8578977)   +2 more
core   +1 more source

viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data

Genome Biology, 2022
Although the use of long-read sequencing improves the contiguity of assembled viral genomes compared to short-read methods, assembling complex viral communities remains an open problem.
Dmitry Antipov, Mikhail Rayko, Mikhail Kolmogorov, Pavel A. Pevzner   +3 more
doaj   +1 more source

A Metagenome‐Assembled Genome Catalog From the Global Ruminant Microbiomes

Animal Research and One Health, EarlyView.
The Ruminant Gastrointestinal MAG Catalog (RGMC) is a comprehensive global resource offering 40,812 strain‐level genomes across 53 bacterial and 4 archaeal classes. It greatly surpasses prior efforts in scale and diversity, serving as an essential foundation for research in ruminant nutrition, microbial function, and methane mitigation.
Shizhe Zhang, Qiushuang Li, Bingzi Ouyang, Wenxing Wang, Xiang Zhou, Xiumin Zhang, Rong Wang, Zhiliang Tan, Min Wang   +8 more
wiley   +1 more source

500 metagenome-assembled microbial genomes from 30 subtropical estuaries in South China

Scientific Data, 2022
Measurement(s) Metagenome-assembled genomes Technology Type(s) Metagenomics Sample Characteristic - Organism Bacteria • Archaea Sample Characteristic - Environment estuarine water Sample Characteristic - Location South China Sea coastal waters of the ...
Lei Zhou, Shihui Huang, Jiayi Gong, Peng Xu, Xiande Huang   +4 more
doaj   +1 more source

Metagenome-assembled genomes (MAGs)

The MetaWRAP pipeline was employed for genome assembly and binning. Specifically, MEGAHIT was used to assemble sequences and generate contigs. Prodigal was used to predict open reading frames (ORFs) in each contig.
Zhou (18148486)
core   +1 more source

Continental scale metagenomics reveals Microcystis‐induced synchrony among aquatic taxa is exacerbated by trophic cascades

Ecography, EarlyView.
Harmful Microcystis proliferation severely threatens aquatic ecosystems globally, but its impacts on food‐web stability remain poorly understood. Here, we analyzed 1309 metagenomic samples from freshwater ecosystems across China to investigate how Microcystis abundance affects synchrony among taxa in multi‐trophic food webs (from bacteriophages to ...
Lemian Liu, Siqi Zhu, Xiaoqin Huang, Wenjia Hu, Lixiang Luo, Xiusong Pan, Jianfeng Chen   +6 more
wiley   +1 more source

Metagenome-assembled genomes (MAGs) from biofloc microbiota.

We recovered over 500 metagenome-assembled genomes (MAGs) from the floc-associated microbiota of commercial biofloc aquaculture systems. These MAGs were then functionally annotated to understand the metabolic potential.
Rajeev Meora (16466445), Jang-Cheon Cho (8919272), Ilnam Kang (8732103), Ilsuk Jung (16468119)   +3 more
core   +1 more source

Gut microbiome seasonality is associated with dietary plasticity and coexistence in three sympatric Pamir ungulates

iMetaOmics, EarlyView.
This graphical abstract outlines a multi‐omics framework investigating the seasonal dietary composition and gut microbial communities of three coexisting ungulate species inhabiting the extreme high‐altitude Pamir Plateau (Ovis ammon polii, Capra sibirica, and Pseudois nayaur). By integrating dietary DNA metabarcoding, 16S rRNA gene sequencing, shotgun
Dilala Tuoliu, Lijiao Zhang, Muyang Wang, Wenxuan Xu, Kathreen Ruckstuhl, António Alves da Silva, Joana Alves, Hongchen Jiang, Weikang Yang   +8 more
wiley   +1 more source

Metagenome-assembled genome of Zalaria obscura strain JY119

Microbiology Resource Announcements
ABSTRACT Here, we report a 22.1-Mbp genome sequence of microcolonial fungi, Zalaria obscura , isolated from a pine tree bark. The microbiome of the new fungi is predicted to be largely associated with Acidobacteriota . The genome sequence of
Lakshmanan Vighnesh, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana   +3 more
openaire   +2 more sources

The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans [PDF]

Scientific Data, 2017
Abstract Microorganisms play a crucial role in mediating global biogeochemical cycles in the marine environment. By reconstructing the genomes of environmental organisms through metagenomics, researchers are able to study the metabolic potential of Bacteria and Archaea that are resistant to isolation in the laboratory.
Tully, Benjamin J., Graham, Elaina D., Heidelberg, John F.   +2 more
openaire   +2 more sources