Results 101 to 110 of about 537,462 (223)

Metagenome-assembled genome of Zalaria obscura strain JY119

Microbiology Resource Announcements
ABSTRACT Here, we report a 22.1-Mbp genome sequence of microcolonial fungi, Zalaria obscura , isolated from a pine tree bark. The microbiome of the new fungi is predicted to be largely associated with Acidobacteriota . The genome sequence of
Lakshmanan Vighnesh, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana   +3 more
openaire   +2 more sources

Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians

Nature Communications, 2022
Reference genomes for gut microbiomes help unravel microbial “dark matter” and serve as valuable resource for disease-focused studies. Here, the authors perform short and long read metagenomics and metagenome-assembled genomes analyses to profile the gut
Jean-Sebastien Gounot, Minghao Chia, Denis Bertrand, Woei-Yuh Saw, Aarthi Ravikrishnan, Adrian Low, Yichen Ding, Amanda Hui Qi Ng, Linda Wei Lin Tan, Yik-Ying Teo, Henning Seedorf, Niranjan Nagarajan   +11 more
doaj   +1 more source

Gut Microbiota of Gray Snub‐Nosed Monkeys: Adaptation to Seasonal Variations Through Energy Compensation and Thermogenesis

Integrative Zoology, EarlyView.
Based on metagenome‐assembled genomes (MAGs), the gut microbiota of the gray snub‐nosed monkeys recovered 1229 non‐redundant MAGs. The gut microbiota showed an enhanced capacity to produce energy substrates with increased conversion activity of these substrates during winter.
Yue Sun, Mingyi Zhang, Xiaochen Wang, Xiaolong Huang, Yanze Yu, Huijuan Pan, Haibo Li, Lei Shi, Wei Yang, Chen Zhang, Bo Ding, Xun Liu, Jianfeng Li, Changjiang Qian, Boxing Cheng, Chao Zhang, Jingcheng Ran, Ming Li   +17 more
wiley   +1 more source

MAGdb: a comprehensive high quality MAGs repository for exploring microbial metagenome-assemble genomes

Genome Biology
Metagenomic analyses of microbial communities have unveiled a substantial level of interspecies and intraspecies genetic diversity by reconstructing metagenome-assembled genomes (MAGs).
Guo Ye, Hao Hong, Ting Li, Jin Li, Jia-Qi Wu, Shuai Jiang, Zhi-Tong Meng, He-Tian Yuan, Wen Xue, Ai-Ling Li, Tao Zhou, Ting-Ting Li, Tao Li   +12 more
doaj   +1 more source

Multi‐Omics Analysis Reveals Coordinated Adaptations in Genes, Metabolism, and Gut Microbiota Underpinning Herbivory in Lordiphosa Flies

Integrative Zoology, EarlyView.
Multi‐omics analysis reveals that herbivorous adaptation in Lordiphosa flies arises from coordinated interactions across the genome, transcriptome, and gut microbiota: genomic expansions of detoxification (e.g., cytochrome P450s) and carbohydrate metabolism gene families, transcriptomic upregulation of energy pathways like lipid oxidation and ...
Run Guo, Jianjun Gao, Caixian Zhang, Zhiheng Chang, Yanbo Sun   +4 more
wiley   +1 more source

The chromosomal genome sequence of the marine sponge Diacarnus erythraeanus Kelly-Borges & Vacelet, 1995, and its associated microbial metagenome sequences [version 2; peer review: 2 approved, 1 approved with reservations]

Wellcome Open Research
We present a genome assembly from an individual Diacarnus erythraeanus (sponge; Porifera; Demospongiae; Poecilosclerida; Podospongiidae). The genome sequence has a total length of 140.86 megabases.
Jose Victor Lopez, Eerik Aunin, Ute Hentschel, Martha Alejandra Durán Canché, Rinat Bar-Shalom, Micha Ilan, Victoria McKenna, Laura Steindler, Elizabeth Sinclair, Graeme Oatley, Camilla Santos, Haoyu Niu, Noah Gettle, Michael Paulini, Rebecca O’Brien   +14 more
doaj   +1 more source

Metagenome-assembled genome sequences from a historical oil field located in Wietze, Germany

, 2020
Characteristics and functional annotation of 42 metagenome-assembled genomes (MAGs)
Wemheuer, Bernd
core   +1 more source

Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes [PDF]

, 2022
The recent introduction of metagenome-assembled genomes (MAGs) has marked a major milestone in the human gut microbiome field (Almeida et al., 2019; Nayfach et al., 2019; Pasolli et al., 2019).
Rudi, Knut, Furu, Kari, Wilson, Robert Charles, Hiseni, Pranvera, Snipen, Lars Gustav   +4 more
core  

Data from: Metagenomes and Metagenome-Assembled Genomes from Ex Vivo Fecal Incubations of Six Unique Donors

, 2023
This is a dataset consisting of donor-specific collections of 78 metagenomes (13 / donor) and 143 metagenome-assembled genomes (MAGs) representing the gut microbiomes of six healthy adult human donors.
Jenni Firrman (17484801), LinShu Liu (17484807), Adrienne Narrowe (17362465), Johanna Lemons (17484930), Karley K. Mahalak (17484798)   +4 more
core   +1 more source

Seasonal Dynamics of Community and Function of Gut Microbiome in Taihangshan Macaque (Macaca mulatta tcheliensis): Inferred From Metagenomic Data

Integrative Zoology, EarlyView.
A total of 435 non‐redundant metagenome‐assembled genomes (MAGs) were obtained from fecal samples of Taihangshan macaque across all four seasons. The alpha diversity of the gut microbiome in spring and winter was significantly higher than in summer and autumn. Furthermore, marked differences were detected in functional pathways and carbohydrate enzymes
Yanyan Zhou, Qi Shao, Chunbo Liu, Jundong Tian, Xiaowen Guan, Xi Zhang, Jiqi Lu   +6 more
wiley   +1 more source