Results 101 to 110 of about 503,920 (237)

Quality metrics for metagenome assembled genomes of Alnus viridis spp. Fruticose nodules

, 2022
Metrics for metagenome assembled genomes of Alnus viridis spp. Fruticose nodules. Binning methods are MaxBin2 v2.2.5,MetaBAT version 2.12.1, CONCOCT v 1.1.0 ,CheckM v1.1.10  , GTDB database R06-RS202, GTDB-tk version v1.5 ...
Neslihan Tas (12964601)
core   +1 more source

Metagenome-assembled genomes (Marshland, Pallikaranai)

We identified the hidden microbes by assembling their sequences into metagenome-assembled genomes (MAGs) using shotgun sequencing data from marshland. This ecosystem is a unique and intricate natural landscape that holds immense ecological and environmental significance.
Achudhan, Arunmozhi Bharathi, Saleena, Lilly M.   +1 more
openaire   +1 more source

Characterization of the dynamic microbiome evolution across thrips species

Insect Science, EarlyView.
Comprehensive survey of the microbiome in thrips. The dominant bacterial genera found in thrips include intracellular ones, such as Wolbachia and Spiroplasma, and extracellular ones, including Serratia, Pantoea, and Acinetobacter. We isolated and sequenced high‐quality genomes of two dominant symbionts, Pantoea dispersa and Serratia marcescens.
Xiaodi Hu, Zhaohui Shi, Yangwei Gao, Hanze Zheng, Lin Lin, Jian‐Ping Chen, Yong Chen, Chuan‐Xi Zhang, Yiyuan Li   +8 more
wiley   +1 more source

Large-scale benchmarking of prokaryotic annotation tools across thousands of species

Genome Biology
Background Genome annotation is an important step in deriving functional meaning from prokaryotic sequencing data, yet systematic evaluations guiding tool selection are lacking. We present the first large-scale investigation of four prominent open-source
Mateusz Jundzill, Martin Hölzer, Serghei Mangul, Mike Marquet, Ralf Ehricht, Mara Lohde, Riccardo Spott, Oliwia Makarewicz, Mathias W. Pletz, Christian Brandt   +9 more
doaj   +1 more source

Sequences of 120 metagenome-assembled genomes

Sequences of 120 metagenome-assembled ...
Yu He (17393905)
core   +1 more source

Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota [PDF]

, 2020
Vertebrate gut microbiota provide many essential services to their host. To better understand the diversity of such services provided by gut microbiota in wild rodents, we assembled metagenome shotgun sequence data from a small mammal, the bank vole ...
Mousseau, Timothy A., Thompson, Luke R., Watts, Phillip C, Mousseau, Timothy A, Lavrinienko, Anton, Watts, Phillip C., Mappes, Tapio, Tukalenko, Eugene, Knight, Rob, Thompson, Luke R   +9 more
core   +1 more source

Effect of Social Rank on Gut Microbes and Their Metabolites of Greater Long‐Tailed Hamsters (Tscherskia triton)

Integrative Zoology, EarlyView.
Social rank in greater long‐tailed hamsters (Tscherskia triton) shapes gut microbiota composition and metabolite profiles. Dominant males exhibit a “high‐vigilance, metabolically activated” phenotype, with elevated aggression and specific gut microbiota enriched in energy‐harvesting taxa and fecal queuine.
Da Zhang, Xiaoming Xu, Zhibin Zhang
wiley   +1 more source

Host Shaping Associated Microbiota in Hydrothermal Vent Snails from the Indian Ocean Ridge

Biology
Snails at hydrothermal vents rely on symbiotic bacteria for nutrition; however, the specifics of these associations in adapting to such extreme environments remain underexplored.
Xiang Zeng, Jianwei Chen, Guilin Liu, Yadong Zhou, Liping Wang, Yaolei Zhang, Shanshan Liu, Zongze Shao   +7 more
doaj   +1 more source

Gut Microbiota of Gray Snub‐Nosed Monkeys: Adaptation to Seasonal Variations Through Energy Compensation and Thermogenesis

Integrative Zoology, EarlyView.
Based on metagenome‐assembled genomes (MAGs), the gut microbiota of the gray snub‐nosed monkeys recovered 1229 non‐redundant MAGs. The gut microbiota showed an enhanced capacity to produce energy substrates with increased conversion activity of these substrates during winter.
Yue Sun, Mingyi Zhang, Xiaochen Wang, Xiaolong Huang, Yanze Yu, Huijuan Pan, Haibo Li, Lei Shi, Wei Yang, Chen Zhang, Bo Ding, Xun Liu, Jianfeng Li, Changjiang Qian, Boxing Cheng, Chao Zhang, Jingcheng Ran, Ming Li   +17 more
wiley   +1 more source

Multi‐Omics Analysis Reveals Coordinated Adaptations in Genes, Metabolism, and Gut Microbiota Underpinning Herbivory in Lordiphosa Flies

Integrative Zoology, EarlyView.
Multi‐omics analysis reveals that herbivorous adaptation in Lordiphosa flies arises from coordinated interactions across the genome, transcriptome, and gut microbiota: genomic expansions of detoxification (e.g., cytochrome P450s) and carbohydrate metabolism gene families, transcriptomic upregulation of energy pathways like lipid oxidation and ...
Run Guo, Jianjun Gao, Caixian Zhang, Zhiheng Chang, Yanbo Sun   +4 more
wiley   +1 more source