Results 121 to 130 of about 537,462 (223)

Artificial Intelligence for Predictive Microbiome Engineering: Integrating Community Design and Environmental Validation

Environmental Microbiology Reports, Volume 18, Issue 6, December 2026.
Overview of an artificial intelligence (AI)‐enabled framework for predictive microbiome engineering, integrating multi‐omics and environmental data through five iterative stages: observe, infer, predict, design, and learn. Data‐driven predictions are linked to experimental validation and potential environmental applications, with data quality ...
Mohammad Nazrul Islam Bhuiyan, Sheikh Julfikar Hossain   +1 more
wiley   +1 more source

Metagenome-Assembled Genome Sequences from an Anoxygenic Photosynthetic Consortium Involved in Sulfur Cycling

, 2020
We sequenced the metagenome of an anoxygenic photosynthetic consortium originating from pond water and reconstructed four metagenome-assembled genomes. These genomes include Desulfocapsa, Paludibacter, Lamprocystis, and Rhodocyclaceae representatives and
Poehlein, Anja, Hoppert, Michael, Nacke, Heiko, Brunotte, Susanne, Rohlmann, Lina, Winkler, Lucia, Münker, Marc F., Diez Alfageme, Alvaro, Reitner, Joachim, Alvaro Diez Alfageme, Susanne Brunotte, Joachim Reitner, Marc F. Münker, Anja Poehlein, Heiko Nacke, Lucia Winkler, Michael Hoppert, Lina Rohlmann   +17 more
core   +1 more source

Metagenome-Assembled Genomes from Photo-Oxidized and Nonoxidized Oil-Degrading Marine Microcosms

, 2023
We performed deep metagenomic sequencing on hydrocarbon-degrading marine microcosms designed to experimentally determine the effect of photo-oxidation on oil biodegradation dynamics.
Meredith C. Moore, Sharma, Akshita, Maxim Kovalev, Moore, Meredith C., Bianca F. Costa, Althouse, Raven C., Emily Peng, Christoph Aeppli, Jing Yao Pook, Sterling, Hannah, Kovalev, Maxim, Timur Kulik, Hannah Sterling, Thrash, J. Cameron, Wood, Celia, Costa, Bianca F., Barnes, Shelby J., J. Cameron Thrash, Aeppli, Christoph, Raven C. Althouse, Kulik, Timur, Lee, Yu Tung, Akshita Sharma, Boyan Hu, Yu-Tung Lee, Pook, Jing Yao, Peng, Emily, Hu, Boyan, Shelby J. Barnes, Celia Wood, Eric A. Webb, Webb, Eric A.   +31 more
core   +1 more source

Rainfall Shapes the Diversity of Soil Nitrogen‐Fixing Microorganisms Worldwide

Advanced Science, Volume 13, Issue 61, 3 November 2026.
This study reveals the distinctive pattern and mechanism of rainfall driving the global biodiversity and biogeography of soil potential N‐fixing microorganisms, and constructs the theoretical framework. The results guide us on how to maintain ecosystem productivity under future climate changes (e.g., whether a specific region needs more N fertilizers ...
Bin Hua, Shuang Pang, Ang Li, Zonghao Hu, Honghui Wu, Shuhan Zhang, Yi Fan, Yi Wu, Wei Yang, Yachao Zhao, Yupeng Guan, Baoming Ji, Deliang Kong, Yong Zhao, Anton A. Goncharov, Anastasia Yu. Korotkevich, Rong Mao, Yang Zhang, Ximei Zhang   +18 more
wiley   +1 more source

Multiplicity Quantifies Intra‐Cluster Diversity in Metagenomic Analysis

Environmental DNA, Volume 8, Issue 6, November‐December 2026.
We introduce multiplicity, a Hill number–based index within the alpha–beta–gamma framework that quantifies the diversity masked when data are clustered into operational units. Available in two versions in the R package divermeta, it reveals hidden intra‐cluster variability and guides clustering choices that balance granularity with diversity ...
Felipe González‐Casabianca, Olesya Dulya, Valeria Flores‐Almaraz, Leho Tedersoo, Vladimir Mikryukov   +4 more
wiley   +1 more source

Deep Understanding of Vaginal Microbiota in HPV‐Related Diseases From a Multi‐Omics Perspective

VIEW Medicine, Volume 1, Issue 1, November 2026.
Current understanding of the vaginal microbiota and roles of critical vaginal bacteria, including Lactobacillus and anaerobic pathogens, in human papillomavirus (HPV) infection and HPV‐related diseases from a multi‐omics perspective. ABSTRACT There is a large number of microorganisms in the human body, which are inseparable from human health.
Jianxujie Zheng, Qing Cong, Ling Lin, Liang Qiao   +3 more
wiley   +1 more source

From short to long: The impact of read length on metagenome assembly and binning

Methods in Ecology and Evolution
Metagenome sequencing not only plays a pivotal role in unravelling the genetic diversity and functional potential of microbial communities but also facilitates the discovery of genome context for microbial dark matter.
Xi Peng, Xingsheng Yang, Danrui Wang, Bo Zhao, Kai Feng, Qing He, Shang Wang, Ye Deng   +7 more
doaj   +1 more source

High-quality Acinetobacter genomes recovered from combat wounds via metagenomic sequencing resemble cultured isolate genomes

Microbiology Spectrum
The ability to accurately characterize wound pathogens is critical to informing clinical decisions for wound infections with complex treatment requirements.
Jeffrey A. Kimbrel, James B. Thissen, Felipe A. Lisboa, Shalini Mabery, Crystal J. Jaing, Eric A. Elster, Seth A. Schobel, Nicholas A. Be   +7 more
doaj   +1 more source

Seasonal and Environmental Influences on Microbial Community Dynamics in the Dunk River Watershed, Prince Edward Island, Canada

Environmental Microbiology, Volume 28, Issue 11, November 2026.
We characterized the taxonomic diversity of river microbial communities across diverse sites using high‐throughput sequencing. Our findings demonstrate that environmental drivers—from seasonal cycles to farm‐level inputs—predictably reshape the bacterial landscape, providing a framework for monitoring aquatic ecosystem dynamics.
Sneha Surya Narayana Murthy, Jiacheng Chuan, Yefang Jiang, Wen Chen, Robert G. Beiko, Xiang Li   +5 more
wiley   +1 more source

Metagenome-assembled microbial genomes from Parkinson’s disease fecal samples

Scientific Reports
The human gut microbiome composition has been linked to Parkinson’s disease (PD). However, knowledge of the gut microbiota on the genome level is still limited.
Ilhan Cem Duru, Alexandre Lecomte, Tânia Keiko Shishido, Pia Laine, Joni Suppula, Lars Paulin, Filip Scheperjans, Pedro A. B. Pereira, Petri Auvinen   +8 more
doaj   +1 more source