Results 111 to 120 of about 537,462 (223)

The chromosomal genome sequence of the sponge Phakellia ventilabrum (Linnaeus, 1767) and its associated microbial metagenome sequences [version 1; peer review: 2 approved]

Wellcome Open Research
We present a genome assembly from a specimen of Phakellia ventilabrum (Porifera; Demospongiae; Bubarida; Bubaridae). The genome sequence has a total length of 211.92 megabases.
Eerik Aunin, Victoria McKenna, Ute Hentschel, Sergi Taboada, Carles Galià, Kathrin Busch, Elizabeth Sinclair, Ana Riesgo, Graeme Oatley, Camilla Santos, Haoyu Niu, Dirk Erpenbeck, Noah Gettle, Michael Paulini, Rebecca O’Brien   +14 more
doaj   +1 more source

Sequences of 120 metagenome-assembled genomes

Sequences of 120 metagenome-assembled ...
Yu He (17393905)
core   +1 more source

Metagenome-assembled bacterial genomes from benthic microbial mats in ice-covered Lake Vanda, Antarctica [PDF]

We recovered 57 bacterial metagenome-assembled genomes (MAGs) from benthic microbial mat pinnacles from Lake Vanda, Antarctica. These MAGs provide access to genomes from polar environments and can assist in culturing and utilizing these Antarctic ...
Jungblut, Anne D, Grettenberger, Christen, Hawes, Ian, Powell, Tyler, Sumner, Dawn Y, Mackey, Tyler   +5 more
core   +1 more source

Microbiota‐Mediated Sequential Gallery Colonization by Adults and Larvae of an Invasive Bark Beetle

Integrative Zoology, EarlyView.
Dispersing adult beetles harbor more pinitol‐degrading microbes to colonize novel host pines with high levels of pinitol stress. These microbes from the beetle's exoskeleton and gut will be transmitted into the gallery via adults’ feeding and frass, whose proliferation in the gallery contributes to the formation of a low‐pinitol microhabitat.
Wei Chen, Yujie Meng, Guanliang Meng, Yunqi Mai, Chenhao Wu, Danmei Liu, Fanghua Liu, Jianghua Sun   +7 more
wiley   +1 more source

Shotgun Metagenomics Reveals Skin Microbiome Composition and Function in Infant Atopic Disease

Allergy, EarlyView.
Deep shotgun metagenomics profiled > 1000 infant skin swabs in the VITALITY cohort. Distinct skin microbiome signatures separated AD alone from AD with allergic co‐occurrence. Early Staphylococcus enrichment preceded later AD with allergic co‐occurrence. FLG mutations and strain‐level analyses revealed host and microbial features linked to AD.
Zeyang Shen, Jana K. Eckert, Richard Saffery, Katrina J. Allen, Audrey Walsh, VITALITY team, Kirsten Perrett, Katrina J. Allen, Justin Brown, Natalie Carvalho, Nigel Curtis, Kim Daziel, Shyamali Dharmage, Ronda Greaves, Lyle Gurrin, Li Huang, Jennifer Koplin, Katherine Lee, Georgia Paxton, Rachel Peters, Anne‐Louise Ponsonby, Peter Sayre, Mimi Tang, Peter Vuillermin, Melissa Wake, Angela Young, Deborah Anderson, Christine Axelrad, Anna Bourke, Kirsty Bowes, Tim Brettig, Natasha Burgess, Beatriz Camesella‐Perez, Xueyuan Che, Daniela Ciciulla, Jac Cushnahan, Helen Czech, Thanh Dang, Kathryn Dawes, Jana Eckert, Hannah Elborough, Michael Field, Charlie Fink, Sarah Fowler, Grace Gell, Rebecca Gray, Emi Habgood, Richard Hall, Phoebe Harris, Erin Hill, Kensuke Hoashi, Hannah Ilhan, Narelle Jenkins, Andrew Knox, Clare Morrison, Melanie Neeland, Jenn Ness, Wendy Norton, Sasha Odoi, Mary Panjari, Kayla Parker, Ahelee Rahman, Ashleigh Rak, Maisie Ralphsmith, Natalie Schreurs, Carrie Service, Victoria Soriano, Judith Spotswood, Mark Taranto, Leone Thiele, Kate Wall, Audrey Walsh, Angela Walsh, Anita Wise, Andrew Davidson, Arul Earnest, Lara Ford, Andrew Kemp, Sam Mehr, Tibor Schuster, Dean Tey, Diana Zannino, Donna Legge, Jason Bell, Joanne Cheah, Kay Hynes, Kee Lim, Emily Porrello, Annette Powell, Pedro Ramos, Anushka Karunanayake, Izabelle Mezzetti, Kayla Parker, Ronita Singh, Harriet Edmund, Bridie Byrne, Tom Keeble, Cuby Martis, Belle Ngien, Penny Glenn, Andrew Kaynes, Clay Deming, Qiong Chen, Karen Laky, Jenny Min Li, Lindsay Chatman, NISC Comparative Sequencing Program, Beatrice B. Barnabas, Sean Black, Gerard G. Bouffard, Shelise Y. Brooks, Juyun Crawford, Holly Marfani, Lyudmila Dekhtyar, Joel Han, Shi‐Ling Ho, Richelle Legaspi, Quino L. Maduro, Catherine A. Masiello, Jennifer C. McDowell, Casandra Montemayor, James C. Mullikin, Morgan Park, Nancy L. Riebow, Karen Schandler, Brian Schmidt, Christina Sison, Sirintorn Stantripop, James W. Thomas, Pamela J. Thomas, Meghana Vemulapalli, Alice C. Young, Heidi H. Kong, Kirsten P. Perrett, Julia A. Segre, Pamela A. Frischmeyer‐Guerrerio   +135 more
wiley   +1 more source

Metagenome-assembled genomes (Marshland, Pallikaranai)

We identified the hidden microbes by assembling their sequences into metagenome-assembled genomes (MAGs) using shotgun sequencing data from marshland. This ecosystem is a unique and intricate natural landscape that holds immense ecological and environmental significance.
Achudhan, Arunmozhi Bharathi, Saleena, Lilly M.   +1 more
openaire   +1 more source

Large-scale benchmarking of prokaryotic annotation tools across thousands of species

Genome Biology
Background Genome annotation is an important step in deriving functional meaning from prokaryotic sequencing data, yet systematic evaluations guiding tool selection are lacking. We present the first large-scale investigation of four prominent open-source
Mateusz Jundzill, Martin Hölzer, Serghei Mangul, Mike Marquet, Ralf Ehricht, Mara Lohde, Riccardo Spott, Oliwia Makarewicz, Mathias W. Pletz, Christian Brandt   +9 more
doaj   +1 more source

From Genomics to Diagnostics: Combating the Spread of Vascular Streak Dieback in North America

Molecular Microbiology, EarlyView.
Genome‐anchored SSR genotyping, TaqMan qPCR, and colorimetric LAMP enable complementary detection of the VSD‐associated Ceratobasidiaceae lineage in woody ornamental tissues. Together, these tools support early surveillance, laboratory confirmation, and nursery biosecurity.
Marcin Nowicki, Sarah L. Boggess, Farhat A. Avin, Fulya Baysal‐Gurel, John C. Bonkowski, Marc A. Cubeta, Matthew L. Huff, Muhammad Junaid, Katherine Kilbourne, John McVay, Colton D. Meinecke, Dewayne Shoemaker, Margaret E. Staton, Robert N. Trigiano, Jackson H. Turner, Caterina Villari, Jean Williams‐Woodward, Denita Hadziabdic   +17 more
wiley   +1 more source

Host Shaping Associated Microbiota in Hydrothermal Vent Snails from the Indian Ocean Ridge

Biology
Snails at hydrothermal vents rely on symbiotic bacteria for nutrition; however, the specifics of these associations in adapting to such extreme environments remain underexplored.
Xiang Zeng, Jianwei Chen, Guilin Liu, Yadong Zhou, Liping Wang, Yaolei Zhang, Shanshan Liu, Zongze Shao   +7 more
doaj   +1 more source

Systematic quantification and removal of host DNA contamination in 16S rRNA gene sequencing

Quantitative Biology, Volume 14, Issue 4, December 2026.
Abstract 16S ribosomal RNA (rRNA) gene sequencing is a standard tool for microbial community analysis. Challenges can occur, particularly in low‐biomass samples, when host DNA triggers off‐target amplification. Low‐biomass microbiome studies are particularly vulnerable to contamination from host DNA, which can obscure microbial signals and bias ...
Till Birkner, Theda Ulrike Patricia Bartolomaeus, Victoria McParland, Sofia Kirke Forslund‐Startceva, Ulrike Löber   +4 more
wiley   +1 more source