Results 141 to 150 of about 537,462 (223)

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

Background: Prokaryotes dominate the biosphere and regulate biogeochemical processes essential to all life. Yet, our knowledge about their biology is for the most part limited to the minority that has been successfully cultured.
Bertilsson, Stefan, Divne, Anna-Maria, Karlsson, Christofer M.G., Homa, Felix, Bergin, Claudia, Lindh, Markus V., Andersson, Anders F., Pinhassi, Jarone, Alneberg, Johannes, Hugerth, Luisa W., Ettema, Thijs JG   +10 more
core   +3 more sources

Deep underground metagenome-assembled genomes from hydrothermal spring

Microbiology Resource Announcements
ABSTRACT We report 19 metagenome-assembled genomes from a deep underground microbial community found in mineralized hydrothermal spring in the Baksan Neutrino Observatory tunnel. The community is predominantly occupied by members of Pseudomonadota (Gamma-, Beta-, and Alphaproteobacteria), Planctomycetota, Myxococcota,
Kirill Tarasov, Elena Kravchenko, Mikhail Zarubin, Alena Yakhnenko   +3 more
openaire   +2 more sources

Waltham catalogue for the canine gut microbiome: a complete taxonomic and functional catalogue of the canine gut microbiome through novel metagenomic based genome discovery

Microbiome
Background The canine microbiome is a vastly understudied area relative to the importance of dogs in society, particularly given the potential importance of the microbiome in veterinary medicine.
Juan Castillo-Fernandez, Rachel Gilroy, Roshonda B. Jones, Ryan W. Honaker, Michaella J. Whittle, Phillip Watson, Gregory C. A. Amos   +6 more
doaj   +1 more source

Insights into the Donkey Hindgut Microbiome Using Metagenome-Assembled Genomes

Animals
The gut microbiota plays an important role in the digestion, absorption, and metabolism of nutrients, as well as in the immunity, health, and behavior of donkeys. While reference genomes and gut microbial gene catalogs have been helpful in understanding the composition of the donkey, there is still a significant gap in sequencing and understanding the ...
Xiyan Kou, Yihong Liu, Fokun Xiang, Xinyue Zhang, Muhammad Zahoor Khan, Boxian Wu, Hua Wang, Yanlin Gong, Changfa Wang, Qingshan Ma, Yan Li   +10 more
openaire   +3 more sources

Why and how to use the SeqCode

mLife
The SeqCode, formally called the Code of Nomenclature of Prokaryotes Described from Sequence Data, is a new code of nomenclature in which genome sequences are the nomenclatural types for the names of prokaryotic species.
William B. Whitman, Maria Chuvochina, Brian P. Hedlund, Konstantinos T. Konstantinidis, Marike Palmer, Luis M. Rodriguez‐R, Iain Sutcliffe, Fengping Wang   +7 more
doaj   +1 more source

Metagenome-assembled genomes from microbiomes fermenting dairy coproducts

Microbiology Resource Announcements
ABSTRACT To advance knowledge of microbial communities capable of fermenting agro-industrial residues into value-added products, we report metagenomes of microbial communities from six anaerobic bioreactors that were fed a mixture of ultra-filtered milk permeate and cottage cheese acid whey.
Kevin A. Walters, Kevin S. Myers, Timothy J. Donohue, Daniel R. Noguera   +3 more
openaire   +2 more sources

Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA

mSystems
We use metagenome-assembled genomes (MAGs) to understand single-carbon (C1) compound-cycling—particularly methane-cycling—microorganisms in montane riparian floodplain sediments.
Anna N. Rasmussen, Bradley B. Tolar, John R. Bargar, Kristin Boye, Christopher A. Francis   +4 more
doaj   +1 more source

Metagenome-assembled genome of the alkaliphilic Cyanobacterium sp. PNNL-SSL1

Microbiology Resource Announcements
ABSTRACT Microalgae and cyanobacteria are promising sources of fuels, chemicals, and bioproducts, but CO 2 supply increases production cost.
Hossein Khadivar, Huyen Bui, Michael Huesemann, Song Gao, Robin Gerlach   +4 more
openaire   +2 more sources

Effects of heat-assisted sample desiccation on microbiome surveys

Environmental Microbiome
Sample preservation remains a challenge in microbiome surveys, particularly in remote areas. Drying samples eliminates the need for cold chains and preservatives, but sophisticated desiccation tools such as lyophilization are impractical in the field ...
Claire E. Mullin, Stilianos Louca
doaj   +1 more source

Metagenomic assembled dataset of potentially polyethylene terephthalate-degrading microcosms enriched from seawater, cow dung, and landfill soilNCBI SRA

Data in Brief
We present a dataset of 99 prokaryotic metagenome-assembled genomes (MAGs) derived from 180-day culture-enrichment microcosms of seawater, landfill soil, and cow dung, with polyethylene terephthalate (PET) as the sole carbon source.
Aubrey Dickon Chigwada, Henry Joseph Oduor Ogola, Memory Tekere   +2 more
doaj   +1 more source