Results 31 to 40 of about 537,462 (223)
Metagenome assembled rumen-uncultured genomes (RUGs)
, 2020 DNA was sequenced from rumen contents from cattle, sheep, red deer and reindeer. We constructed 391 metagenome assembled rumen-uncultured genomes (RUGs).Glendinning, Laura. (2019).
Glendinning, Laura; id_orcid +1 more
core +2 more sources
Metagenome-assembled genomes uncover a global brackish microbiome [PDF]
Genome Biology, 2015 Abstract Microbes are main drivers of biogeochemical cycles in oceans and lakes, yet surprisingly few bacterioplankton genomes have been sequenced, partly due to difficulties in cultivating them. Here we used automatic binning to reconstruct a large number of bacterioplankton genomes from a metagenomic time-series from the Baltic Sea ...
Luisa W. Hugerth +6 more
openaire +4 more sources
Nature Communications, 2022 Here, the authors present SemiBin, a siamese deep neural network framework that incorporates information from reference genomes, able to extract better metagenome-assembled genomes (MAGs) in several host-associated and environmental habitats.
Shaojun Pan +3 more
doaj +1 more source
Microbiology Resource Announcements, 2021 The rhizosphere microbiome plays an essential role in enhancing the growth of plants, raising the need for comprehension of their metabolic abilities. Here, we investigated rhizospheric and bulk soils of maize plants in Mafikeng, South Africa. Metagenome-assembled genomes containing plant growth-promoting genes were reconstructed.
Olubukola O. Babalola +2 more
openaire +2 more sources
Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes
Nature Communications, 2022 Here, using whole-metagenome shotgun sequencing data from patients with COVID-19 and controls, the authors reconstruct 11,584 microbial metagenome-assembled genomes (MAGs) including 5,403 non-redundant MAGs, revealing microbiota and metabolic pathways ...
Shanlin Ke, Scott T. Weiss, Yang-Yu Liu
doaj +1 more source
Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories [PDF]
mBio, 2019 In their recent study, Espinoza et al. employ genome-resolved metagenomics to investigate supragingival plaque metagenomes of 88 individuals (1). The 34 metagenome-assembled genomes (MAGs) that the authors report include those that resolve to clades that have largely evaded cultivation efforts, such as Gracilibacteria (formerly GN02) and ...
Alon Shaiber, A. Murat Eren
openaire +3 more sources
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning
PLOS Computational Biology, 2022 The number of published metagenome assemblies is rapidly growing due to advances in sequencing technologies. However, sequencing errors, variable coverage, repetitive genomic regions, and other factors can produce misassemblies, which are challenging to detect for taxonomically novel genomic data.
Olga Mineeva +5 more
openaire +7 more sources
Metagenome-assembled genomes from the temperate forest phyllosphere in Eastern Canada. [PDF]
Access MicrobiolThe phyllosphere is host to diverse microbial communities surviving in dynamic environmental conditions and which form important relationships with their hosts. Here, we constructed metagenome-assembled genomes (MAGs) from 25 temperate forest phyllosphere samples collected in Eastern Canada.
Ross DAN +3 more
europepmc +3 more sources
Characterization of metagenome-assembled genomes from the International Space Station
Microbiome, 2022 Abstract Background Several investigations on the microbial diversity and functional properties of the International Space Station (ISS) environment were carried out to understand the influence of spaceflight conditions on the microbial population.
Nitin K. Singh +6 more
openaire +3 more sources
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters [PDF]
PeerJ, 2021 Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean.
Clara Jégousse +4 more
doaj +2 more sources