Results 11 to 20 of about 503,920 (237)
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes [PDF]
BMC Genomics, 2017 Background Microbiome/host interactions describe characteristics that affect the host's health. Shotgun metagenomics includes sequencing a random subset of the microbiome to analyze its taxonomic and metabolic potential.
Bhavya Papudeshi +11 more
doaj +5 more sources
Reconstruction of Metagenome-Assembled Genomes from Aquaria. [PDF]
Microbiology Resource Announcements, 2021 Here, we report 11 metagenome-assembled genomes (MAGs) reconstructed from freshwater and saltwater aquaria, including representatives of Polynucleobacter, Anaerolinea, Roseobacter, Flavobacteriia, Octadecabacter, Mycobacterium, and Candidate Phyla ...
Eisen, Jonathan A +5 more
core +6 more sources
Microbiome, 2018 Background Prokaryotes dominate the biosphere and regulate biogeochemical processes essential to all life. Yet, our knowledge about their biology is for the most part limited to the minority that has been successfully cultured.
Johannes Alneberg +10 more
doaj +2 more sources
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes [PDF]
Microbiome, 2017 BackgroundProkaryotes dominate the biosphere and regulate biogeochemical processes essential to all life. Yet, our knowledge about their biology is for the most part limited to the minority that has been successfully cultured.
Stefan Bertilsson +10 more
core +9 more sources
Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes [PDF]
mSphere, 2017 Microbes are critical in carbon and nutrient cycling in freshwater ecosystems. Members of the Verrucomicrobia are ubiquitous in such systems, and yet their roles and ecophysiology are not well understood.
Shaomei He +7 more
doaj +7 more sources
Critical assessment of pan-genomics of metagenome-assembled genomes [PDF]
, 2022 Abstract Background Large scale metagenome assembly and binning to generate metagenome-assembled genomes (MAGs) has become possible in the past five years. As a result, millions of MAGs have been produced and increasingly included in pan-genomics workflow.
Tang Li, Yanbin Yin
openaire +1 more source
Metagenome-assembled-genomes (MAGs)
, 2022 MAGs were constructed using snakemake metagenome workflow in anvi'o (Eren et al., 2015). A detailed explanation on the workflow (such as the softwares used in anvi'o) can be found in the supplementary material of the paper.
Ömer Coskun (9725927)
core +2 more sources
Metagenome assembled genomes are for eukaryotes too
Cell Genomics, 2022 Environmental community sequencing is suitable for producing metagenome assembled genomes (MAGs) of prokaryotes, but there is the perception that it cannot work for eukaryotes. In this issue of Cell Genomics, Delmont et al(1) process a massive sequencing dataset from marine plankton to produce 683 eukaryotic MAGs; the study also includes useful ...
Massana, Ramon, López-Escardó, David
openaire +2 more sources
Metagenome-assembled genomes of Cyanobacteria in cryoconite
, 2022 These data are associated with the manuscript "Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light harvesting mechanisms in glacier cryoconite".
Takumi Murakami (10828728)
core +2 more sources
Metagenome-assembled genomes from sugarcane mill mud
Microbiology Resource Announcements, 2023 ABSTRACT The genomes of 11 bacteria and 3 archaea were assembled from metagenomic DNA extracted from sugarcane mill mud. These metagenome-assembled genomes ranged from 1.79 to 6.45 Mb, with 2,263 to 5,551 predicted proteins, 80.65% to 100% genome completeness, and 43.19% to 68.02% G+C content.
Minori Uchimiya +3 more
openaire +2 more sources