Results 21 to 30 of about 41,114 (206)
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. [PDF]
Mol Biol Evol, 2011 Tamura K +5 more
europepmc +2 more sources
PQ, a new program for phylogeny reconstruction
BMC Bioinformatics, 2018 Background Many algorithms and programs are available for phylogenetic reconstruction of families of proteins. Methods used widely at present use either a number of distance-based principles or character-based principles of maximum parsimony or maximum ...
Dmitry Penzar +2 more
doaj +1 more source
A phylogenomic appraisal of the evolutionary relationship of mycoplasmas
Genetics and Molecular Biology, 2007 Several genomes of mycoplasmas have been sequenced and here we tried to retrieve the evolutionary relationships of nine species using a phylogenomic approach.
Karla S.C. Yotoko, Sandro L. Bonatto
doaj +1 more source
Well-Behaved Variants Seldom Make the Apparatus: Stemmata and Apparatus in Digital Research
Digital Medievalist, 2021 This article describes computer-assisted methods for the analysis of textual variation within large textual traditions. It focuses on the conversion of the XML apparatus into NEXUS, a file type commonly used in bioinformatics. Phylogenetics methods are
Barbara Bordalejo
doaj +2 more sources
BMC Bioinformatics, 2019 Background Maximum parsimony reconciliation in the duplication-transfer-loss model is widely used in studying the evolutionary histories of genes and species and in studying coevolution of parasites and their hosts and pairs of symbionts. While efficient
Santi Santichaivekin +2 more
doaj +1 more source
Assessing the accuracy of ancestral protein reconstruction methods.
PLoS Computational Biology, 2006 The phylogenetic inference of ancestral protein sequences is a powerful technique for the study of molecular evolution, but any conclusions drawn from such studies are only as good as the accuracy of the reconstruction method.
Paul D Williams +3 more
doaj +1 more source
Mosasauroid phylogeny under multiple phylogenetic methods provides new insights on the evolution of aquatic adaptations in the group. [PDF]
PLoS ONE, 2017 Mosasauroids were a successful lineage of squamate reptiles (lizards and snakes) that radiated during the Late Cretaceous (95-66 million years ago). They can be considered one of the few lineages in the evolutionary history of tetrapods to have acquired ...
Tiago R Simões +4 more
doaj +1 more source
Statistical parsimony networks and species assemblages in Cephalotrichid nemerteans (nemertea). [PDF]
PLoS ONE, 2010 BACKGROUND: It has been suggested that statistical parsimony network analysis could be used to get an indication of species represented in a set of nucleotide data, and the approach has been used to discuss species boundaries in some taxa.
Haixia Chen +7 more
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Arthritis Care &Research, Accepted Article.Objectives There is growing interest in evaluating new strategies to delay or prevent post‐traumatic osteoarthritis (PTOA) in individuals who have sustained anterior cruciate ligament (ACL) injury. This study sought to determine characteristics of potential treatments that are acceptable to patients with ACL injury.
Kevin Kennedy +9 more
wiley +1 more source
A short guide to phylogeny reconstruction
Plant, Soil and Environment, 2007 This review is a short introduction to phylogenetic analysis. Phylogenetic analysis allows comprehensive understanding of the origin and evolution of species.
E. Michu
doaj +1 more source