Results 1 to 10 of about 149,450 (115)

U.PhyloMaker: An R package that can generate large phylogenetic trees for plants and animals [PDF]

Plant Diversity, 2023
The previously released packages of the PhyloMaker series (i.e. S.PhyloMaker, V.PhyloMaker, and V.PhyloMaker2) have been broadly used to generate phylogenetic trees for ecological and biogeographical studies.
Yi Jin, Hong Qian
doaj   +2 more sources

Visualizing incompatibilities in phylogenetic trees using consensus outlines [PDF]

Frontiers in Bioinformatics, 2023
Phylogenetic analysis frequently leads to the creation of many phylogenetic trees, either from using multiple genes or methods, or through bootstrapping or Bayesian analysis.
Daniel H. Huson, Daniel H. Huson, Banu Cetinkaya, Banu Cetinkaya   +3 more
doaj   +2 more sources

Phylogenetic Structure of Tree Species across Different Life Stages from Seedlings to Canopy Trees in a Subtropical Evergreen Broad-Leaved Forest

PLoS ONE, 2015
Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is
Yi Jin, Hong Qian, Mingjian Yu
exaly   +2 more sources

Imputing Phylogenetic Trees Using Tropical Polytopes over the Space of Phylogenetic Trees

Mathematics, 2023
When we apply comparative phylogenetic analyses to genome data, it poses a significant problem and challenge that some of the given species (or taxa) often have missing genes (i.e., data).
Ruriko Yoshida
doaj   +1 more source

Computing RF Tree Distance over Succinct Representations

Algorithms, 2023
There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks or cancerous cells in tumor progression trees.
António Pedro Branco, Cátia Vaz, Alexandre P. Francisco   +2 more
doaj   +1 more source

TreeViewer: Flexible, modular software to visualise and manipulate phylogenetic trees [PDF]

Ecology and Evolution
Giorgio Bianchini, Patricia Sánchez-Baracaldo   +1 more
exaly   +2 more sources

ENJ algorithm can construct triple phylogenetic trees

Molecular Therapy: Nucleic Acids, 2021
Phylogenetic analysis is used to analyze the evolution of species according to the characteristics of biological sequences. The analytical results are generally represented by phylogenetic trees.
Yan Hong, Maozu Guo, Juan Wang
doaj   +1 more source

Community phylogeny and spatial scale affect phylogenetic diversity metrics in a species‐rich rainforest in Borneo

Ecology and Evolution, 2022
Community phylogenetic analysis is an effective approach to understanding the process of community formation. The phylogenetic tree of the species pool is reconstructed in the first step, and the phylogenetic tree obtained in the second step is used to ...
Seiya Okuno, Tingting Yin, Satoshi Nanami, Shuhei Matsuyama, Koichi Kamiya, Sylvester Tan, Stuart J. Davies, Mohizah Mohamad, Takuo Yamakura, Akira Itoh   +9 more
doaj   +1 more source

Phylogenetic trees: Grammar versus vocabulary

Russian Journal of Linguistics, 2022
Traditionally, genealogical relationships between languages are established on the basis of phonetic and lexical data. The question whether genealogical relationships among languages can be defined based on grammatical data remains unanswered.
Vladimir N. Polyakov, Elena A. Makarova, Valery D. Solovyev   +2 more
doaj   +1 more source

Species divergence and phylogenetic variation of ecophysiological traits in lianas and trees. [PDF]

PLoS ONE, 2014
The climbing habit is an evolutionary key innovation in plants because it is associated with enhanced clade diversification. We tested whether patterns of species divergence and variation of three ecophysiological traits that are fundamental for plant ...
Rodrigo S Rios, Cristian Salgado-Luarte, Ernesto Gianoli   +2 more
doaj   +1 more source