Results 31 to 40 of about 1,097,195 (292)

Predicting functional gene links from phylogenetic-statistical analyses of whole genomes [PDF]

, 2005
An important element of the developing field of proteomics is to understand protein-protein interactions and other functional links amongst genes. Across-species correlation methods for detecting functional links work on the premise that functionally ...
Barker, Daniel, Barker, D., Pagel, M, Pagel Mark, Pagel, M., Daniel Barker, Barker Daniel, Mark Pagel   +7 more
core   +2 more sources

QAlign: quality-based multiple alignments with dynamic phylogenetic analysis [PDF]

, 2003
Sammeth M, Rothgänger J, Esser W, Albert J, Stoye J, Harmsen D. QAlign: quality-based multiple alignments with dynamic phylogenetic analysis. BIOINFORMATICS.
Esser, Wolfram, Sammeth, Michael, Stoye, Jens ; https://orcid.org/, Rothgänger, Jörg, Albert, Jürgen, Harmsen, Dag   +5 more
core   +1 more source

PhyloFinder: An intelligent search engine for phylogenetic tree databases

BMC Evolutionary Biology, 2008
Background Bioinformatic tools are needed to store and access the rapidly growing phylogenetic data. These tools should enable users to identify existing phylogenetic trees containing a specified taxon or set of taxa and to compare a specified ...
Bansal Mukul S, Burleigh J Gordon, Chen Duhong, Fernández-Baca David   +3 more
doaj   +1 more source

Syntactic Phylogenetic Trees [PDF]

, 2018
21 pages, LaTeX, jpg ...
Shu, Kevin, Aziz, Sharjeel, Huynh, Vy-Luan, Warrick, David, Marcolli, Matilde   +4 more
openaire   +3 more sources

Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions [PDF]

, 2012
Dörr D, Gronau I, Moran S, Yavneh I. Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms for Molecular Biology.
Gronau, Ilan, Ilan Gronau, Irad Yavneh, Daniel Doerr, Yavneh, Irad, Moran, Shlomo, Doerr Daniel, Gronau Ilan, Moran Shlomo, Yavneh Irad, Shlomo Moran, Dörr, Daniel ; https://orcid.org/   +11 more
core   +1 more source

A vectorial tree distance measure

Scientific Reports, 2022
A vectorial distance measure for trees is presented. Given two trees, we define a Tree-Alignment (T-Alignment). We T-align the trees from their centers outwards, starting from the root-branches, to make the next level as similar as possible.
Avner Priel, Boaz Tamir
doaj   +1 more source

Rearrangement operations on unrooted phylogenetic networks

Theory and Applications of Graphs, 2019
Rearrangement operations transform a phylogenetic tree into another one and hence induce a metric on the space of phylogenetic trees. Popular operations for unrooted phylogenetic trees are NNI (nearest neighbour interchange), SPR (subtree prune and ...
Remie Janssen, Jonathan Klawitter
doaj   +1 more source

Identifying phylogenetic trees

Discrete Mathematics, 2005
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Magnus Bordewich, Katharina T. Huber, Charles Semple   +2 more
openaire   +3 more sources

Phylogenetic Codivergence Supports Coevolution of Mimetic Heliconius Butterflies [PDF]

, 2012
The unpalatable and warning-patterned butterflies _Heliconius erato_ and _Heliconius melpomene_ provide the best studied example of mutualistic Müllerian mimicry, thought – but rarely demonstrated – to promote coevolution.
Michael Charleston, Jennifer Hoyal Cuthill (166634), Michael Charleston (88460), Jennifer Hoyal Cuthill   +3 more
core   +2 more sources

The shape of human gene family phylogenies [PDF]

, 2006
Background: The shape of phylogenetic trees has been used to make inferences about the evolutionary process by comparing the shapes of actual phylogenies with those expected under simple models of the speciation process. Previous studies have focused
James A Cotton, Page, R.D.M., Cotton James A, Roderic DM Page, Page Roderic DM, Cotton, J.A.   +5 more
core   +1 more source