Results 41 to 50 of about 149,860 (254)
Sound Colless-like balance indices for multifurcating trees. [PDF]
PLoS ONE, 2018 The Colless index is one of the most popular and natural balance indices for bifurcating phylogenetic trees, but it makes no sense for multifurcating trees.
Arnau Mir +2 more
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Representing non-crossing cuts by phylogenetic trees
Electronic Journal of Graph Theory and Applications, 2021 Phylogenetic trees are representations of the evolutionary descendency of a set of species. In graph-theoretic terms, a phylogenetic tree is a partially labeled tree where unlabeled vertices have at least degree three and labels corresponds to pairwise ...
Thomas Lange
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Visualising very large phylogenetic trees in three dimensional hyperbolic space
BMC Bioinformatics, 2004 Background Common existing phylogenetic tree visualisation tools are not able to display readable trees with more than a few thousand nodes. These existing methodologies are based in two dimensional space.
Liberles David A +2 more
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BMC Bioinformatics, 2008 Background Due to recent progress in genome sequencing, more and more data for phylogenetic reconstruction based on rearrangement distances between genomes become available. However, this phylogenetic reconstruction is a very challenging task.
Abouelhoda Mohamed I +2 more
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jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web. [PDF]
PLoS ONE, 2010 Many software packages have been developed to address the need for generating phylogenetic trees intended for print. With an increased use of the web to disseminate scientific literature, there is a need for phylogenetic trees to be viewable across many ...
Samuel A Smits, Cleber C Ouverney
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Structural insights and therapeutic targets in Acinetobacter baumannii capsule biosynthesis
FEBS Letters, EarlyView.Hypervirulent KL49 A. baumannii's capsular polysaccharide contains the nonulosonic acid 8‐epi‐Leg5,7Ac2, synthesized by epimerization via ElaA, ElaB, and ElaC. Crystal structures of ElaA, ElaB, and ElaC reveal their role in CMP‐Leg5,7Ac2 synthesis and regioselective C8 epimerization.
Woo Cheol Lee +7 more
wiley +1 more source
Analysis on Algorithms for Constructing Phylogenetic Trees From Distances
IEEE Access, 2019 Neighbour-joining algorithm (NJ for short) is an used widely algorithm for constructing phylogenetic trees from distances because of its high accuracy. For NJ costs a lot of time to construct phylogenetic trees for the large input data, it does not often
Juan Wang
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On Symmetries in Phylogenetic Trees
The Electronic Journal of Combinatorics, 2016 Billey et al. [arXiv:1507.04976] have recently discovered a surprisingly simple formula for the number $a_n(\sigma)$ of leaf-labelled rooted non-embedded binary trees (also known as phylogenetic trees) with $n\geq 1$ leaves, fixed (for the relabelling action) by a given permutation $\sigma\in\frak{S}_n$.
openaire +3 more sources
FEBS Letters, EarlyView.Inositol pyrophosphates are energy‐rich signaling molecules that perform critical functions in cells. Three different families of phosphatases hydrolyze the β phosphate of the inositol pyrophosphate molecules: two have narrow specificities and one is promiscuous.
Ronda J. Rolfes
wiley +1 more source
Generating normal networks via leaf insertion and nearest neighbor interchange
BMC Bioinformatics, 2019 Background Galled trees are studied as a recombination model in theoretical population genetics. This class of phylogenetic networks has been generalized to tree-child networks and other network classes by relaxing a structural condition imposed on ...
Louxin Zhang
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