Results 41 to 50 of about 2,045,161 (322)
Genome rearrangements and phylogeny reconstruction in Yersinia pestis [PDF]
PeerJ, 2018 Genome rearrangements have played an important role in the evolution of Yersinia pestis from its progenitor Yersinia pseudotuberculosis. Traditional phylogenetic trees for Y.
Olga O. Bochkareva +7 more
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A parsimony-based metric for phylogenetic trees [PDF]
, 2015 In evolutionary biology various metrics have been defined and studied for comparing phylogenetic trees. Such metrics are used, for example, to compare competing evolutionary hypotheses or to help organize algorithms that search for optimal trees. Here we
Alberich +21 more
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Sound Colless-like balance indices for multifurcating trees. [PDF]
PLoS ONE, 2018 The Colless index is one of the most popular and natural balance indices for bifurcating phylogenetic trees, but it makes no sense for multifurcating trees.
Arnau Mir +2 more
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Representing non-crossing cuts by phylogenetic trees
Electronic Journal of Graph Theory and Applications, 2021 Phylogenetic trees are representations of the evolutionary descendency of a set of species. In graph-theoretic terms, a phylogenetic tree is a partially labeled tree where unlabeled vertices have at least degree three and labels corresponds to pairwise ...
Thomas Lange
doaj +1 more source
In the Light of Deep Coalescence: Revisiting Trees Within Networks [PDF]
, 2016 Phylogenetic networks model reticulate evolutionary histories. The last two decades have seen an increased interest in establishing mathematical results and developing computational methods for inferring and analyzing these networks.
Nakhleh, Luay, Yu, Yun, Zhu, Jiafan
core +1 more source
The Shapley Value of Phylogenetic Trees [PDF]
, 2007 Every weighted tree corresponds naturally to a cooperative game that we call a "tree game"; it assigns to each subset of leaves the sum of the weights of the minimal subtree spanned by those leaves.
Haake, Claus-Jochen +2 more
core +3 more sources
Phylogenetic diversity and biodiversity indices on phylogenetic networks
, 2018 In biodiversity conservation it is often necessary to prioritize the species to conserve. Existing approaches to prioritization, e.g. the Fair Proportion Index and the Shapley Value, are based on phylogenetic trees and rank species according to their ...
Fischer, Mareike, Wicke, Kristina
core +1 more source
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Virus Evolution, 2018 The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data.
M. Suchard +5 more
semanticscholar +1 more source
Visualising very large phylogenetic trees in three dimensional hyperbolic space
BMC Bioinformatics, 2004 Background Common existing phylogenetic tree visualisation tools are not able to display readable trees with more than a few thousand nodes. These existing methodologies are based in two dimensional space.
Liberles David A +2 more
doaj +1 more source
BMC Bioinformatics, 2008 Background Due to recent progress in genome sequencing, more and more data for phylogenetic reconstruction based on rearrangement distances between genomes become available. However, this phylogenetic reconstruction is a very challenging task.
Abouelhoda Mohamed I +2 more
doaj +1 more source