Phylogenetic support values are not necessarily informative : the case of the Serialia hypothesis (a mollusk phylogeny) [PDF]
, 2009 Background: Molecular phylogenies are being published increasingly and many biologists rely on the most recent topologies. However, different phylogenetic trees often contain conflicting results and contradict significant background data. Not knowing how
Annette Klussmann-Kolb +17 more
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Genome rearrangements and phylogeny reconstruction in Yersinia pestis [PDF]
PeerJ, 2018 Genome rearrangements have played an important role in the evolution of Yersinia pestis from its progenitor Yersinia pseudotuberculosis. Traditional phylogenetic trees for Y.
Olga O. Bochkareva +7 more
doaj +2 more sources
Representing non-crossing cuts by phylogenetic trees
Electronic Journal of Graph Theory and Applications, 2021 Phylogenetic trees are representations of the evolutionary descendency of a set of species. In graph-theoretic terms, a phylogenetic tree is a partially labeled tree where unlabeled vertices have at least degree three and labels corresponds to pairwise ...
Thomas Lange
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, 2014 This readme file describes the tree files for all phylogenetic analyses as performed in the above publication For any further queries please contact ghai.rohit@gmail ...
Camacho, Antonio +9 more
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Improved Bayesian methods for detecting recombination and rate heterogeneity in DNA sequence alignments [PDF]
, 2011 DNA sequence alignments are usually not homogeneous. Mosaic structures may result as a consequence of recombination or rate heterogeneity. Interspecific recombination, in which DNA subsequences are transferred between different (typically viral or ...
Mantzaris, Alexander Vassilios +1 more
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Visualising very large phylogenetic trees in three dimensional hyperbolic space
BMC Bioinformatics, 2004 Background Common existing phylogenetic tree visualisation tools are not able to display readable trees with more than a few thousand nodes. These existing methodologies are based in two dimensional space.
Liberles David A +2 more
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jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web. [PDF]
PLoS ONE, 2010 Many software packages have been developed to address the need for generating phylogenetic trees intended for print. With an increased use of the web to disseminate scientific literature, there is a need for phylogenetic trees to be viewable across many ...
Samuel A Smits, Cleber C Ouverney
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Analysis on Algorithms for Constructing Phylogenetic Trees From Distances
IEEE Access, 2019 Neighbour-joining algorithm (NJ for short) is an used widely algorithm for constructing phylogenetic trees from distances because of its high accuracy. For NJ costs a lot of time to construct phylogenetic trees for the large input data, it does not often
Juan Wang
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Phylogenetic Comparative Assembly [PDF]
, 2009 Husemann P, Stoye J. Phylogenetic Comparative Assembly. Algorithms for Molecular Biology. 2010;5(1): 3.BACKGROUND:Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects ...
Stoye Jens +5 more
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Structural insights and therapeutic targets in Acinetobacter baumannii capsule biosynthesis
FEBS Letters, EarlyView.Hypervirulent KL49 A. baumannii's capsular polysaccharide contains the nonulosonic acid 8‐epi‐Leg5,7Ac2, synthesized by epimerization via ElaA, ElaB, and ElaC. Crystal structures of ElaA, ElaB, and ElaC reveal their role in CMP‐Leg5,7Ac2 synthesis and regioselective C8 epimerization.
Woo Cheol Lee +7 more
wiley +1 more source