Results 21 to 30 of about 2,045,161 (322)
DendroSSR: SSRs and sequence alignment as tools for building phylogeny trees
Brazilian Journal of Biology, 2023 This study introduces a new method to construct phylogenetic trees by combining both of the Simple Sequence Repeats (SSRs) and sequence alignments.
M. Alhawatema
doaj +1 more source
Robust information from phylogenetic trees? [PDF]
, 2010 Traditional information criteria approaches can lead to misleading model choice in comparative phylogenetics. I present both these weaknesses and a more robust comparison by likelihood ratio.
Carl Boettiger
core +2 more sources
Nucleic Acids Res., 2016 Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone.
Ivica Letunic, P. Bork
semanticscholar +1 more source
Cophenetic metrics for phylogenetic trees, after Sokal and Rohlf [PDF]
, 2013 Phylogenetic tree comparison metrics are an important tool in the study of evolution, and hence the definition of such metrics is an interesting problem in phylogenetics.
Cardona, Gabriel +4 more
core +2 more sources
Visualizing phylogenetic tree landscapes [PDF]
BMC Bioinformatics, 2017 Genomic-scale sequence alignments are increasingly used to infer phylogenies in order to better understand the processes and patterns of evolution. Different partitions within these new alignments (e.g., genes, codon positions, and structural features) often favor hundreds if not thousands of competing phylogenies. Summarizing and comparing phylogenies
Wilgenbusch, James C. +2 more
openaire +2 more sources
PhyloFinder: An intelligent search engine for phylogenetic tree databases
BMC Evolutionary Biology, 2008 Background Bioinformatic tools are needed to store and access the rapidly growing phylogenetic data. These tools should enable users to identify existing phylogenetic trees containing a specified taxon or set of taxa and to compare a specified ...
Bansal Mukul S +3 more
doaj +1 more source
A vectorial tree distance measure
Scientific Reports, 2022 A vectorial distance measure for trees is presented. Given two trees, we define a Tree-Alignment (T-Alignment). We T-align the trees from their centers outwards, starting from the root-branches, to make the next level as similar as possible.
Avner Priel, Boaz Tamir
doaj +1 more source
Rearrangement operations on unrooted phylogenetic networks
Theory and Applications of Graphs, 2019 Rearrangement operations transform a phylogenetic tree into another one and hence induce a metric on the space of phylogenetic trees. Popular operations for unrooted phylogenetic trees are NNI (nearest neighbour interchange), SPR (subtree prune and ...
Remie Janssen, Jonathan Klawitter
doaj +1 more source
Effects of memory on the shapes of simple outbreak trees [PDF]
, 2016 Genomic tools, including phylogenetic trees derived from sequence data, are increasingly used to understand outbreaks of infectious diseases. One challenge is to link phylogenetic trees to patterns of transmission.
Boyd, M +3 more
core +1 more source
OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome Biology, 2019 Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, S. Kelly
semanticscholar +1 more source