Results 11 to 20 of about 1,097,195 (292)
TreeViewer: Flexible, modular software to visualise and manipulate phylogenetic trees [PDF]
Ecology and EvolutionPatricia Sánchez-Baracaldo +1 more
exaly +2 more sources
ENJ algorithm can construct triple phylogenetic trees
Molecular Therapy: Nucleic Acids, 2021 Phylogenetic analysis is used to analyze the evolution of species according to the characteristics of biological sequences. The analytical results are generally represented by phylogenetic trees.
Yan Hong, Maozu Guo, Juan Wang
doaj +1 more source
Ecology and Evolution, 2022 Community phylogenetic analysis is an effective approach to understanding the process of community formation. The phylogenetic tree of the species pool is reconstructed in the first step, and the phylogenetic tree obtained in the second step is used to ...
Seiya Okuno +9 more
doaj +1 more source
Phylogenetic trees: Grammar versus vocabulary
Russian Journal of Linguistics, 2022 Traditionally, genealogical relationships between languages are established on the basis of phonetic and lexical data. The question whether genealogical relationships among languages can be defined based on grammatical data remains unanswered.
Vladimir N. Polyakov +2 more
doaj +1 more source
Matchings and phylogenetic trees [PDF]
Proceedings of the National Academy of Sciences, 1998 This paper presents a natural coordinate system for phylogenetic trees using a correspondence with the set of perfect matchings in the complete graph. This correspondence produces a distance between phylogenetic trees, and a way of enumerating all trees in a minimal step order. It is useful in randomized algorithms because it enables moves on the space
Diaconis, Persi W., Holmes, Susan P.
openaire +2 more sources
Journal of Software for Algebra and Geometry, 2021 We introduce the package PhylogeneticTrees for Macaulay2 which allows users to compute phylogenetic invariants for group-based tree models. We provide some background information on phylogenetic algebraic geometry and show how the package PhylogeneticTrees can be used to calculate a generating set for a phylogenetic ideal as well as a lower bound for ...
Baños, Hector +8 more
openaire +3 more sources
Species divergence and phylogenetic variation of ecophysiological traits in lianas and trees. [PDF]
PLoS ONE, 2014 The climbing habit is an evolutionary key innovation in plants because it is associated with enhanced clade diversification. We tested whether patterns of species divergence and variation of three ecophysiological traits that are fundamental for plant ...
Rodrigo S Rios +2 more
doaj +1 more source
The Shapley value of phylogenetic trees [PDF]
Journal of Mathematical Biology, 2007 References added, and a section (calculating the Shapley value of a tree game from its subtrees) was removed for length reasons (request of referee) and may appear in another paper. 16 pages; related work at http://www.math.hmc.edu/~su/papers.html. Journal of Mathematical Biology, to appear.
Haake, Claus-Jochen +2 more
openaire +7 more sources
Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure [PDF]
, 2013 Background: Most phylogeny analysis methods based on molecular sequences use multiple alignment where the quality of the alignment, which is dependent on the alignment parameters, determines the accuracy of the resulting trees.
Sırrı Yüzbaşıoğlu +25 more
core +1 more source
Construction of a phylogenetic tree of photosynthetic prokaryotes based on average similarities of whole genome sequences. [PDF]
PLoS ONE, 2013 Phylogenetic trees have been constructed for a wide range of organisms using gene sequence information, especially through the identification of orthologous genes that have been vertically inherited.
Soichirou Satoh +2 more
doaj +1 more source