Results 141 to 150 of about 30,204 (224)

The Metabarcoding Analysis Pipeline (MAP): Simple, accurate, and flexible metabarcoding

Current metabarcoding pipelines are inflexible with respect to study design and are poorly suited to long-read sequence data. To address these limitations, we developed MAP, the Metabarcoding Analysis Pipeline, which is a sequence-to-answer workflow ...
Saeideh Jafarpour, Sameer Padhye, Nicholas W Bard, Robin A Floyd, Sean WJ Prosser, Ken A Thompson, Emine Ozsahin, Paul D. N. Hebert   +7 more
core   +1 more source

Impact of bauxite mining on mosquito communities (Diptera: Culicidae) and pathogen transmission risks in the eastern Amazon

Medical and Veterinary Entomology, EarlyView.
Bauxite mining in the Amazon alters mosquito communities, favouring anthropophilic and generalist vectors while reducing species diversity and the variety of blood meal sources. Molecular analyses identified humans, tapirs and deer as the primary blood meal sources.
Mayron Mielly Morais Pacheco, Poliana da Silva Lemos, Mônica Silva Coelho, Tatiane Marques Porangaba de Oliveira, Luciano Chaves Franco Filho, Øystein Wiig, Ana Cristina Mendes‐Oliveira, Leonardo Sena, Maria Anice Mureb Sallum   +8 more
wiley   +1 more source

Ecological and genomic variation in ectomycorrhizal fungal exploration types

New Phytologist, EarlyView.
Summary Ectomycorrhizal fungi (EMF) produce mycelia with variable extension and complexity, which can be classified according to soil ‘exploration types’ (ETs). ETs have received attention as one of the few mycorrhizal trait frameworks, but without an empirical classification of ET functional diversity and environmental preferences, understanding and ...
Thomas M. Mansfield, Artin Zarsav, Filipa Cox, Laura M. Suz, Martin I. Bidartondo, Sietse van der Linde, Nadia Barsoum, Colin Averill, Alan Kuo, Leho Tedersoo, Pasi Rautio, Arthur Gessler, Bruno De Vos, Luc Croisé, Henning Meesenburg, Markus Wagner, Frank Jacob, Paweł Lech, Anna Kowalska, Martin Greve, Genoveva Popova, Beat Frey, Marcus Schaub, Marco Ferretti, Peter Waldner, Vicent Calatayud, Roberto Canullo, Giancarlo Papitto, Aleksander Marinšek, Lars Vesterdal, Morten Ingerslev, Helge Meissner, Volkmar Timmermann, Nadine Eickenscheidt, Andreas Schmitz, Francis M. Martin, Joseph Spatafora, Peter G. Kennedy, Annegret Kohler, Jonathan M. Plett, Ian C. Anderson, Sara Branco, Igor V. Grigoriev, Chris J. Pires, Sarah A. Unruh, Lawrence W. Zettler, Otto Miettinen, Ilya Viner, Tom W. May, Teresa Lebel, David E. A. Catcheside, Pamela S. Catcheside, Helen P. Vonow, Leigh A. Burgoyne, Julia Haska, Mark A. Anthony   +55 more
wiley   +1 more source

Plant genetic and root‐associated microbial diversity modulate Lactuca sativa responsiveness to a soil inoculum under phosphate deficiency

New Phytologist, EarlyView.
Leaf phosphate and shoot biomass variation in response to the microbial consortium. Summary Microbial‐based approaches offer a promising strategy to decrease the use of chemical fertilizers in agriculture. Among them, arbuscular mycorrhizal fungi (AMF), which extend root surface area and enhance phosphate uptake, and phosphate‐solubilizing bacteria ...
Arianna Capparotto, Alessandro Ciampanelli, Paolo Salvucci, Guillaume Chesneau, Johannes Herpell, Simone Sello, Cristina Sudiro, Pieter Clauw, Adriano Altissimo, Stéphane Hacquard, Francesco Vuolo, Marco Giovannetti   +11 more
wiley   +1 more source

Experimental and genomic evidence clarifies the mycorrhizal helper role of a widespread bacterium in Bishop pine forests

New Phytologist, EarlyView.
Hypothetical model of Paraburkholderia–EcMF–Bishop pine interactions. Summary Whether a widespread bacterial strain of Paraburkholderia can enhance the physiological responses of ectomycorrhizal fungi (EcMF) and host Bishop pine seedling growth remains unclear. We developed a ‘top‐down meets bottom‐up’ approach that harmonized data from molecular field
Louis Berrios, Deborah L. Narh, Lia Kim, Kabir G. Peay   +3 more
wiley   +1 more source

A New Unsupervised Machine Learning Method for Metabarcoding Analysis Based on Selected Mock Community Data. [PDF]

Comput Struct Biotechnol J
An HE, Mun MH, Kim JI, Kim CB.
europepmc   +1 more source

Strawberry micropropagation simplifies endomicrobiome and highlights potential for in vitro biotization with beneficial rhizobacteria

Plant Biology, EarlyView.
Prolonged in vitro micropropagation reshaped the strawberry endomicrobiome, reducing bacterial diversity and community complexity. Biotization with selected plant growth‐promoting bacteria partially compensated for these changes by improving plant performance and acclimatization, supporting microbiome‐assisted approaches for tissue culture systems ...
A. M. G. Sepúlveda, E. da Conceição Jesus, Y. C. Molina, V. H. Buttrós, L. Q. Carvalho, M. Pasqual, J. Dória   +6 more
wiley   +1 more source

Three sampling strategies reveal spatial and methodological patterns in macroinvertebrate diversity in freshwater habitats. [PDF]

iScience
Li L, Wan Q, Pu T, Yin X, Han J.
europepmc   +1 more source

Uncovering a new Scrippsiella species from the Black Sea: Scrippsiella phycobiana sp. nov. (Thoracosphaerales, Dinophyceae)

Phycological Research, EarlyView.
SUMMARY The dinophyte genus Scrippsiella is a common and ecologically important component of coastal microplankton communities, yet its species diversity in the Black Sea remains insufficiently resolved due to morphological similarity among taxa and the scarcity of integrative taxonomic studies. Here, we describe Scrippsiella phycobiana sp. nov., a new
Urban Tillmann, Nina Dzhembekova
wiley   +1 more source

Bycatch in a bottle: what taxa are recoverable from metabarcoding DNA in historical invertebrate collection preservative fluid? [PDF]

J Hered
Seresinghe A, Herbst D, Quick-Cleveland J, Korneyev S, Maples BK, Horna Lowell ES, Mosser M, Fisher RN, Palkovacs EP, Gluesenkamp D, Meyer RS.   +10 more
europepmc   +1 more source