Results 131 to 140 of about 12,672 (167)

IRP: eDNA metabarcoding

2022
Documents and data supporting an undergraduate independent research project final report about the effectiveness of eDNA metabarcoding as a mammal monitoring ...
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Metabarcoding in gut protozoology

Trends in Parasitology
Next-generation sequencing (NGS) methods include whole-genome sequencing, metagenomic analysis, and amplicon-based NGS, all of which are gaining territory in parasitology. A modality of particular interest within the field of gut protozoology is exhaustive metabarcoding of ribosomal genes in a complex matrix such as faeces, by which method, amplicon ...
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The future of eDNA metabarcoding

2018
Abstract Environmental DNA-based research is undergoing rapid developments, but its democratization in basic and applied research remains hampered by the biases introduced by molecular approaches, the difficulties in estimating absolute organisms’ abundances, and a lack of general consensus in molecular protocols.
Pierre Taberlet, Aurélie Bonin, Lucie Zinger, Eric Coissac   +3 more
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DNA Metabarcoding: Current Applications and Challenges

Journal of Agricultural and Food Chemistry
DNA metabarcoding is a versatile approach that combines high-throughput sequencing (HTS) with DNA barcoding and enables the simultaneous identification of multiple species in complex DNA samples. With the rapid development of high-throughput sequencing (HTS), DNA meta-barcoding has been widely applied in many fields.
Huilin Yuan, Jianping Han, Meihua Yang, Shilin Chen, Xiaohui Pang   +4 more
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DNA metabarcoding data analysis

2018
Abstract DNA metabarcoding generates huge amounts of data containing noise introduced by molecular methods. Chapter 8 “DNA metabarcoding data analysis” discusses the analytic steps and available software to curate and evaluate DNA metabarcoding data prior to final ecological analyses. It provides command lines to perform primary analyses
Pierre Taberlet, Aurélie Bonin, Lucie Zinger, Eric Coissac   +3 more
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DNA metabarcode choice and design

2018
Abstract Chapter “DNA metabarcode choice and design” develops the properties of the ideal metabarcode in a given context, including conservation of the primer annealing regions and resolution power across the target taxonomic group of interest.
Pierre Taberlet, Aurélie Bonin, Lucie Zinger, Eric Coissac   +3 more
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Metabarcoding for plant pathologists

Canadian Journal of Plant Pathology, 2023
Martha A. Sudermann, Zachary S. L. Foster, Jeff H. Chang, Niklaus J. Grünwald   +3 more
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Environmental DNA and RNA Metabarcoding

Environmental DNA (eDNA) and RNA (eRNA) technologies, when integrated with metabarcoding, have emerged as significant instruments in cancer research particularly in exposomics and environmental carcinogenesis. These approaches facilitate the identification and monitoring of genetic material from many environmental sources, yielding insights into the ...
Odangowei Inetiminebi Ogidi, Ejeomo Christopher, Happiness Adaekwu Orlu   +2 more
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Protocols for phytoplankton metabarcoding

Protocols for Phytoplancton metabarcoding.
Alric, Benjamin, Canino, Alexis, Laplace-Treyture, Christophe, Domaizon, Isabelle, Rimet, Frédéric   +4 more
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Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

Science of the Total Environment, 2022
Filipe Oliveira Costa, Tristan Cordier, Sofia Duarte   +2 more
exaly