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Metagenomics and antibiotics [PDF]

Clinical Microbiology and Infection, 2012
Most of the bacterial species that form part of the biosphere have never been cultivated. In this situation, a comprehensive study of bacterial communities requires the utilization of non-culture-based methods, which have been named metagenomics.
María Blanca Sánchez, José L. Martínez, Leonor Garmendia, Alvaro Hernández   +3 more
openaire   +2 more sources

Identification of Simplified Microbial Communities That Inhibit Clostridioides difficile Infection through Dilution/Extinction

mSphere, 2020
The gastrointestinal microbiome plays an important role in limiting susceptibility to infection with Clostridioides difficile. To better understand the ecology of bacteria important for C.
Jennifer M. Auchtung, Eva C. Preisner, James Collins, Armando I. Lerma, Robert A. Britton   +4 more
doaj   +3 more sources

Characteristics of the Gut Bacterial Composition in People of Different Nationalities and Religions

Microorganisms, 2022
High-throughput sequencing has made it possible to extensively study the human gut microbiota. The links between the human gut microbiome and ethnicity, religion, and race remain rather poorly understood.
Mikhail Syromyatnikov, Ekaterina Nesterova, Maria Gladkikh, Yuliya Smirnova, Mariya Gryaznova, Vasily Popov   +5 more
doaj   +1 more source

Characteristics of the Fecal Microbiome of Piglets with Diarrhea Identified Using Shotgun Metagenomics Sequencing

Animals, 2023
Diarrhea in piglets is one of the most common diseases leading to high mortality and, as a result, to economic losses. Shotgun metagenomic sequencing was performed on the DNBSEQ-G50, MGI system to study the role of the fecal microbiome in the development
Mariya Gryaznova, Yuliya Smirnova, Inna Burakova, Polina Morozova, Ekaterina Nesterova, Mariya Gladkikh, Evgeny Mikhaylov, Mikhail Syromyatnikov   +7 more
doaj   +1 more source

Thermal Therapy Modulation of the Psoriasis-Associated Skin and Gut Microbiome

Dermatology and Therapy, 2023
Introduction Psoriasis is a systemic immune-mediated disease primarily manifesting as skin redness and inflammation. Balneotherapy proved to be a successful non-pharmacological option to reduce the skin areas affected by the disease, but the specific ...
Serena Manara, Francesco Beghini, Giulia Masetti, Federica Armanini, Davide Geat, Giulia Galligioni, Nicola Segata, Stefania Farina, Mario Cristofolini   +8 more
doaj   +1 more source

Dynamics of Changes in the Gut Microbiota of Healthy Mice Fed with Lactic Acid Bacteria and Bifidobacteria

Microorganisms, 2022
Probiotics are living microorganisms that provide numerous health benefits for their host. Probiotics have various effects on the body; for example, they change gut microbiota, improve the integrity of the epithelial barrier and have anti-inflammatory ...
Mariya Gryaznova, Yulia Dvoretskaya, Inna Burakova, Mikhail Syromyatnikov, Evgeny Popov, Anastasia Kokina, Evgeny Mikhaylov, Vasily Popov   +7 more
doaj   +1 more source

Lower Genital Tract Microbiome in Early Pregnancy in the Eastern European Population

Microorganisms, 2022
Background: It is known that the features of the cervicovaginal microbiome can depend on ethnicity, which might be caused by genetic factors, as well as differences in diet and lifestyle.
Mariya Gryaznova, Olga Lebedeva, Olesya Kozarenko, Yuliya Smirnova, Inna Burakova, Mikhail Syromyatnikov, Alexander Maslov, Vasily Popov   +7 more
doaj   +1 more source

Metagenomics and probiotics [PDF]

Clinical Microbiology and Infection, 2012
The development of extensive sequencing methods has allowed metagenomic studies on the human gut microbiome to be carried out. This has tremendously increased our knowledge on gut microbiota composition and activity, allowing microbiota aberrations related to different diseases to be identified.
Gueimonde Fernández, Miguel, Collado, María Carmen   +1 more
openaire   +4 more sources

Metagenomic Thermometer

DNA Research, 2022
AbstractVarious microorganisms exist in environments, and each of which has an optimal growth temperature (OGT). The relationship between genomic information and OGT of each species has long been studied, and one such study revealed that OGT of prokaryotes can be accurately predicted based on the fraction of seven amino acids (IVYWREL) among all ...
Masaomi Kurokawa, Koichi Higashi, Keisuke Yoshida, Tomohiko Sato, Shigenori Maruyama, Hiroshi Mori, Ken Kurokawa   +6 more
openaire   +2 more sources

Acute and long-term effects of antibiotics commonly used in laboratory animal medicine on the fecal microbiota

Veterinary Research, 2020
Biomedical research relies on the use of animal models, and the animals used in those models receive medical care, including antibiotics for brief periods of time to treat conditions such as dermatitis, fight wounds, and suspected bacterial pathogens of ...
Scott W. Korte, Rebecca A. Dorfmeyer, Craig L. Franklin, Aaron C. Ericsson   +3 more
doaj   +1 more source