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Diversity of dsDNA Viruses in a South African Hot Spring Assessed by Metagenomics and Microscopy

open access: yesViruses, 2017
The current view of virus diversity in terrestrial hot springs is limited to a few sampling sites. To expand our current understanding of hot spring viral community diversity, this study aimed to investigate the first African hot spring (Brandvlei hot ...
Olivier Zablocki   +3 more
doaj   +1 more source

Gestational diabetes and the human salivary microbiota: a longitudinal study during pregnancy and postpartum

open access: yesBMC Pregnancy and Childbirth, 2020
Background An aberrant composition of the salivary microbiota has been found in individuals with type 2 diabetes, and in pregnant women salivary microbiota composition has been associated with preeclampsia and pre-term birth.
Mie K. W. Crusell   +8 more
doaj   +1 more source

Longitudinal study of the scalp microbiome suggests coconut oil to enrich healthy scalp commensals

open access: yesScientific Reports, 2021
Dandruff is a recurrent chronic scalp disorder, affecting majority of the population worldwide. Recently a metagenomic study of the Indian scalp microbiome described an imperative role of bacterial commensals in providing essential vitamins and amino ...
Rituja Saxena   +7 more
doaj   +1 more source

Molecular Methods for Detecting Microorganisms in Beverages

open access: yesBeverages
Beverages are an integral component of a person’s food package. Various types of microorganisms widely contaminate beverages. This review presents current research data aimed at identifying dominant microorganisms in beverages and molecular methods for ...
Ekaterina Nesterova   +4 more
doaj   +1 more source

Genome Sequence of Peacock Reveals the Peculiar Case of a Glittering Bird

open access: yesFrontiers in Genetics, 2018
The unique ornamental features and extreme sexual traits of Peacock have always intrigued scientists and naturalists for centuries. However, the genomic basis of these phenotypes are yet unknown.
Shubham K. Jaiswal   +9 more
doaj   +1 more source

Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater

open access: yesMicrobiologyOpen, 2023
Microbial communities in freshwater streams play an essential role in ecosystem functioning via biogeochemical cycling. Yet, the impacts of treated wastewater influx into stream ecosystems on microbial strain diversity remain mostly unexplored.
Tom L. Stach   +11 more
doaj   +1 more source

plsMD: a plasmid reconstruction tool from short-read assemblies

open access: yesBMC Bioinformatics
Background While whole genome sequencing has become a cornerstone of antimicrobial resistance surveillance, the reconstruction of plasmid sequences from short-read data remains a challenge due to repetitive sequences and assembly fragmentation.
Maryam Lotfi   +2 more
doaj   +1 more source

Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics

open access: yesMicrobiome, 2019
Background Mosquitoes are the most important invertebrate viral vectors in humans and harbor a high diversity of understudied viruses, which has been shown in many mosquito virome studies in recent years.
Chenyan Shi   +7 more
doaj   +1 more source

Genomically Informed Surveillance for Carbapenem-Resistant Enterobacteriaceae in a Health Care System

open access: yesmBio, 2015
Carbapenem-resistant Enterobacteriaceae (CRE) are an urgent public health concern. Rapid identification of the resistance genes, their mobilization capacity, and strains carrying them is essential to direct hospital resources to prevent spread and ...
Nicole D. Pecora   +8 more
doaj   +1 more source

Fecal Microbiota Characteristics in Constipation-Predominant and Mixed-Type Irritable Bowel Syndrome

open access: yesMicroorganisms
Background: Irritable bowel syndrome (IBS) is a common condition that affects the lifestyle of patients. It is associated with significant changes in the composition of the gut microbiome, but the underlying microbial mechanisms remain to be fully ...
Mariya Gryaznova   +7 more
doaj   +1 more source

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