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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph [PDF]
Bioinform., 2014 MEGAHIT is a NGS de novo assembler for assembling large and complex metagenomics data in a time- and cost-efficient manner. It finished assembling a soil metagenomics dataset with 252 Gbps in 44.1 and 99.6 h on a single computing node with and without a ...
Dinghua Li +4 more
semanticscholar +5 more sources
Microbiome, 2019 Background Mosquitoes are the most important invertebrate viral vectors in humans and harbor a high diversity of understudied viruses, which has been shown in many mosquito virome studies in recent years.
Chenyan Shi +7 more
doaj +2 more sources
Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions
Foods, 2023 Various fields have been identified in the “omics” era, such as genomics, proteomics, transcriptomics, metabolomics, phenomics, and metagenomics. Among these, metagenomics has enabled a significant increase in discoveries related to the microbial world ...
N. N. Nam +3 more
semanticscholar +1 more source
Characteristics of the Gut Bacterial Composition in People of Different Nationalities and Religions
Microorganisms, 2022 High-throughput sequencing has made it possible to extensively study the human gut microbiota. The links between the human gut microbiome and ethnicity, religion, and race remain rather poorly understood.
Mikhail Syromyatnikov +5 more
doaj +1 more source
Lower Genital Tract Microbiome in Early Pregnancy in the Eastern European Population
Microorganisms, 2022 Background: It is known that the features of the cervicovaginal microbiome can depend on ethnicity, which might be caused by genetic factors, as well as differences in diet and lifestyle.
Mariya Gryaznova +7 more
doaj +1 more source
mSphere, 2020 The gastrointestinal microbiome plays an important role in limiting susceptibility to infection with Clostridioides difficile. To better understand the ecology of bacteria important for C.
Jennifer M. Auchtung +4 more
doaj +3 more sources
Thermal Therapy Modulation of the Psoriasis-Associated Skin and Gut Microbiome
Dermatology and Therapy, 2023 Introduction Psoriasis is a systemic immune-mediated disease primarily manifesting as skin redness and inflammation. Balneotherapy proved to be a successful non-pharmacological option to reduce the skin areas affected by the disease, but the specific ...
Serena Manara +8 more
doaj +1 more source
Veterinary Research, 2020 Biomedical research relies on the use of animal models, and the animals used in those models receive medical care, including antibiotics for brief periods of time to treat conditions such as dermatitis, fight wounds, and suspected bacterial pathogens of ...
Scott W. Korte +3 more
doaj +1 more source
Animals, 2023 Diarrhea in piglets is one of the most common diseases leading to high mortality and, as a result, to economic losses. Shotgun metagenomic sequencing was performed on the DNBSEQ-G50, MGI system to study the role of the fecal microbiome in the development
Mariya Gryaznova +7 more
doaj +1 more source
Microorganisms, 2022 Probiotics are living microorganisms that provide numerous health benefits for their host. Probiotics have various effects on the body; for example, they change gut microbiota, improve the integrity of the epithelial barrier and have anti-inflammatory ...
Mariya Gryaznova +7 more
doaj +1 more source