Results 101 to 110 of about 149,337 (415)
Longitudinal study of the scalp microbiome suggests coconut oil to enrich healthy scalp commensals
Scientific Reports, 2021 Dandruff is a recurrent chronic scalp disorder, affecting majority of the population worldwide. Recently a metagenomic study of the Indian scalp microbiome described an imperative role of bacterial commensals in providing essential vitamins and amino ...
Rituja Saxena +7 more
doaj +1 more source
Viruses, 2023 Virome research is a rapidly growing area in the microbiome field that is increasingly associated with human diseases, such as inflammatory bowel disease (IBD).
Daan Jansen, Jelle Matthijnssens
doaj +1 more source
A pipeline for targeted metagenomics of environmental bacteria. [PDF]
, 2020 BackgroundMetagenomics and single cell genomics provide a window into the genetic repertoire of yet uncultivated microorganisms, but both methods are usually taxonomically untargeted.
Bowers, Robert M +7 more
core +2 more sources
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
Genome Biology, 2018 False-positive identifications are a significant problem in metagenomics classification. We present KrakenUniq, a novel metagenomics classifier that combines the fast k-mer-based classification of Kraken with an efficient algorithm for assessing the ...
F. Breitwieser +2 more
semanticscholar +1 more source
Open resource metagenomics: a model for sharing metagenomic libraries [PDF]
Standards in Genomic Sciences, 2011 Both sequence-based and activity-based exploitation of environmental DNA have provided unprecedented access to the genomic content of cultivated and uncultivated microorganisms. Although researchers deposit microbial strains in culture collections and DNA sequences in databases, activity-based metagenomic studies typically only publish sequences from ...
David R. Rose +5 more
openaire +3 more sources
Gut Microbiota‐Butyrate‐PPARγ Axis Modulates Adipose Regulatory T Cell Population
Advanced Science, EarlyView.This study identifies the indispensable role of gut microbiota in the maintenance of ST2+ adipose Treg cell population, and defines gut microbiota‐derived butyrate as an endogenous PPARγ agonist, modulating adipose Treg cell populations via promoting PPARγ activation. Butyrate or fiber supplementation restores the VAT ST2+ Treg population in obese mice
Banru Chen +16 more
wiley +1 more source
iMeta, Volume 1, Issue 4, December 2022., 2022 We developed a tool to get high‐quality genomes with high taxonomic resolution by combining the cobarcoding information with public references. Compared with the conventional combination strategies, our pipeline generated a large number of high‐quality genomes for the human microbial cobarcoding data sets. Abstract Metagenomic evidence of great genetic
Yanwei Qi +12 more
wiley +1 more source
Metagenomic screening of the sugarcane virome in Florida. [P.36] [PDF]
, 2015 Viral metagenomics has revolutionized the way pathologists decipher viral diseases. While the impact of this new approach is still debatable in plant virus diagnostics, viral metagenomics has already produced key advances in viral ecology and has the ...
Comstock, Jack C. +5 more
core
Pairwise and incremental multi-stage alignment of metagenomes: A new proposal [PDF]
, 2017 Traditional comparisons between metagenomes are often performed using reference databases as intermediary templates from which to obtain distance metrics.
Pérez-Wohlfeil, Esteban +2 more
core +1 more source
Consensus statement: Virus taxonomy in the age of metagenomics
Nature Reviews Microbiology, 2017 The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control ...
P. Simmonds +25 more
semanticscholar +1 more source