Analyzing the differences between reads and contigs when performing a taxonomic assignment comparison in metagenomics [PDF]
, 2018 Metagenomics is an inherently complex field in which one of the primary goals is to determine the compositional organisms present in an environmental sample.
Díaz-del-Pino, Sergio +4 more
core
Prediction of microbial communities for urban metagenomics using neural network approach. [PDF]
, 2019 BACKGROUND:Microbes are greatly associated with human health and disease, especially in densely populated cities. It is essential to understand the microbial ecosystem in an urban environment for cities to monitor the transmission of infectious diseases ...
Jiang, Jyun-Yu +3 more
core +1 more source
Evaluating the Information Content of Shallow Shotgun Metagenomics
mSystems, 2018 A common refrain in recent microbiome-related academic meetings is that the field needs to move away from broad taxonomic surveys using 16S sequencing and toward more powerful longitudinal studies using shotgun sequencing.
Benjamin M Hillmann +7 more
semanticscholar +1 more source
Complete genome sequence of bovine polyomavirus type 1 from aborted cattle, isolated in Belgium in 2014 [PDF]
, 2016 <p>The complete and fully annotated genome sequence of a bovine polyomavirus type 1 (BPyV/BEL/1/2014) from aborted cattle was assembled from a metagenomics data set. The 4,697-bp circular dsDNA genome contains 6 protein-coding genes.
Behaeghel, Isabelle +7 more
core +2 more sources
Fecal Microbiota Characteristics in Constipation-Predominant and Mixed-Type Irritable Bowel Syndrome
MicroorganismsBackground: Irritable bowel syndrome (IBS) is a common condition that affects the lifestyle of patients. It is associated with significant changes in the composition of the gut microbiome, but the underlying microbial mechanisms remain to be fully ...
Mariya Gryaznova +7 more
doaj +1 more source
Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters
Microbiome, 2019 Microbial communities present in environmental waters constitute a reservoir for antibiotic-resistant pathogens that impact human health. For this reason, a diverse variety of water environments are being analyzed using metagenomics to uncover public ...
P. Fresia +8 more
semanticscholar +1 more source
Emerging Clostridioides difficile ribotypes have divergent metabolic phenotypes
mSystemsClostridioides difficile is a gram-positive spore-forming pathogen that commonly causes diarrheal infections in the developed world. Although C. difficile is a genetically diverse species, certain ribotypes are overrepresented in human infections, and it
Firas S. Midani +6 more
doaj +1 more source
Metagenomics-enabled microbial surveillance
Nature Microbiology, 2022 Karrie K. K. Ko +2 more
semanticscholar +1 more source
Expanding the RNA Virosphere by Unbiased Metagenomics.
Annual Review of Virology, 2019 Although viruses comprise the most abundant genetic material in the biosphere, to date only several thousand virus species have been formally defined.
Yong‐Zhen Zhang +4 more
semanticscholar +1 more source
Statistical Analysis of Metagenomics Data
Genomics & Informatics, 2019 Understanding the role of the microbiome in human health and how it can be modulated is becoming increasingly relevant for preventive medicine and for the medical management of chronic diseases.
M. Calle
semanticscholar +1 more source