Results 151 to 160 of about 149,337 (415)
The metagenomics of biosilicification: causes and effects [PDF]
, 2008 In order to determine the links between geochemical parameters controlling the formation of silica sinter in hot springs and their associated microbial diversity, a detailed characterisation of the waters and of in situ-grown silica sinters was combined ...
D. J. Tobler +3 more
core +2 more sources
Evaluating the Information Content of Shallow Shotgun Metagenomics
mSystems, 2018 A common refrain in recent microbiome-related academic meetings is that the field needs to move away from broad taxonomic surveys using 16S sequencing and toward more powerful longitudinal studies using shotgun sequencing.
Benjamin M Hillmann +7 more
semanticscholar +1 more source
Angewandte Chemie International Edition, Accepted Article.Pseudomonas syringae is a soil‐dwelling bacterium that exhibits remarkable niche adaptability and it is known for its devastating impact as a plant pathogen. This bacterium has an outstanding capability to produce a wide array of biologically active natural products. P.
Shuaibing Zhang +7 more
wiley +1 more source
Machine learning for metagenomics: methods and tools [PDF]
arXiv, 2015 Owing to the complexity and variability of metagenomic studies, modern machine learning approaches have seen increased usage to answer a variety of question encompassing the full range of metagenomic NGS data analysis. We review here the contribution of machine learning techniques for the field of metagenomics, by presenting known successful approaches
arxiv
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads. [PDF]
, 2019 As metagenomic studies move to increasing numbers of samples, communities like the human gut may benefit more from the assembly of abundant microbes in many samples, rather than the exhaustive assembly of fewer samples.
Arthur, Timothy D +30 more
core +1 more source
Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics
Science, 2015 Methane cycling gets more diverse The production and consumption of methane by microorganisms play a major role in the global carbon cycle. Although these processes can occur in a range of environments, from animal guts to the deep ocean, these ...
P. Evans +6 more
semanticscholar +1 more source
Antibacterial Siderophores of Pandoraea Pathogens and their Impact on the Diseased Lung Microbiota
Angewandte Chemie International Edition, Accepted Article.Antibiotic‐resistant bacteria of the genus Pandoraea, frequently acquired from the environment, are an emerging cause of opportunistic respiratory infections, especially in cystic fibrosis (CF) patients. However, their specialized metabolites, including niche and virulence factors, remained unknown.
Elena Herzog +8 more
wiley +1 more source
Analysis of Metagenome Composition by the Method of Random Primers [PDF]
arXiv, 2016 Metagenome, a mixture of different genomes (as a rule, bacterial), represents a pattern, and the analysis of its composition is, currently, one of the challenging problems of bioinformatics. In the present study, the possibility of evaluating metagenome composition by DNA-marker methods is investigated.
arxiv
Prediction of microbial communities for urban metagenomics using neural network approach. [PDF]
, 2019 BACKGROUND:Microbes are greatly associated with human health and disease, especially in densely populated cities. It is essential to understand the microbial ecosystem in an urban environment for cities to monitor the transmission of infectious diseases ...
Jiang, Jyun-Yu +3 more
core
Fecal Microbiota Characteristics in Constipation-Predominant and Mixed-Type Irritable Bowel Syndrome
MicroorganismsBackground: Irritable bowel syndrome (IBS) is a common condition that affects the lifestyle of patients. It is associated with significant changes in the composition of the gut microbiome, but the underlying microbial mechanisms remain to be fully ...
Mariya Gryaznova +7 more
doaj +1 more source