Results 151 to 160 of about 117,934 (343)

Fimsbactin Siderophores From a South African Marine Sponge Symbiont, Marinomonas sp. PE14‐40

Microbial Biotechnology
Low iron levels in marine habitats necessitate the production of structurally diverse siderophores by many marine bacterial species for iron acquisition.
Nompumelelo Philile Praiseworth Ikegwuoha, Thea Hanekom, Elzaan Booysen, Corbyn Jason, Shirley Parker‐Nance, Michael T. Davies‐Coleman, Leonardo Joaquim vanZyl, Marla Trindade   +7 more
doaj   +1 more source

Modular automated high‐throughput isolation and phylogenetic identification of bacteria from complex microbiomes

iMetaOmics, EarlyView.
Metagenomic analysis can generate hypotheses about microbiome interactions and function, yet mechanistic understanding is only possible through precise experimentation manipulating its microbiota composition. The high‐throughput isolation of microbiome members thus represents a core resource in this field of research.
Rubén Chaboy‐Cansado, Silvia Talavera‐Marcos, Ramón Gallego‐Simón, Paula Cobeta, Gabriel Roscales, Alberto Rastrojo, Daniel Aguirre de Cárcer   +6 more
wiley   +1 more source

HiFi based metagenomic assembly strategy provides accuracy near isolated genome resolution in MAG assembly

iMetaOmics, EarlyView.
Recovering high‐contiguity, circular bacterial genomes from complex microbiomes (e.g., gut) is challenged by limitations of short‐read and error‐prone long‐read sequencing. This study comprehensively compares PacBio High‐Fidelity (HiFi) sequencing‐based metagenome‐assembled genomes (MAGs) against Illumina MAGs, Oxford Nanopore Technologies (ONT) MAGs ...
Feilong Deng, Yanhua Han, Minghui Li, Yunjuan Peng, Jianmin Chai, Guan Yang, Ying Li, Jiangchao Zhao   +7 more
wiley   +1 more source

Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data [PDF]

, 2007
Larry Wilhelm, H. James Tripp, Scott A. Givan, Daniel P. Smith, Stephen J. Giovannoni   +4 more
openalex   +1 more source

Distinctive metabolic disturbances associated with redox homeostasis, nervous and hormonal functions during gut microbial enrichment upon polystyrene microplastic exposure

iMetaOmics, EarlyView.
Microplastic‐induced gut microbial enrichment was dominated by bacteria within Eubacteriales, correlated with the virome, and accompanied by colitis. The polyamine synthetic pathway was activated to maintain glutathionylspermidine homeostasis, concurrent with decreases in pathways involved in the production of energy and reactive oxygen species under ...
Guozhu Ye, Zeming Wu, Guoyou Chen, Xuyi Liu, Yifang Duan, Minghui Li, Qiansheng Huang   +6 more
wiley   +1 more source

Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem

, 1970
Nur A. Hasan, Wasimul B. Chowdhury, Md Niaz Rahim, Marzia Sultana, Syeda Antara Shabnam, Volker Mai, Afsar Ali, Glen J Morris, R. Bradley Sack, Anwar Huq, Rita R. Colwell, Hubert P. Endtz, Alejandro Cravioto, Munirul Alam   +13 more
openalex   +2 more sources

RTTAP: Empowering metatranscriptomic data analysis with a read‐based total‐infectome taxonomic solution

iMetaOmics, EarlyView.
Metatranscriptomic data analysis is a complex task due to its sheer volume and the need for sophisticated bioinformatics tools. To address this, we developed the Read‐based Total‐infectome Taxonomic Analysis Pipeline (RTTAP), an automated pipeline for metatranscriptomic data analysis that eliminates the need for users to manually select databases ...
Wei Jiang, Herui Liao, Mang Shi, Liangjun Chen, Yanni Sun   +4 more
wiley   +1 more source

Metagenomics and the global ocean survey: what's in it for us, and why should we care? [PDF]

, 2007
Kenneth H. Nealson, J. Craig Venter
openalex   +1 more source

Metagenomics [PDF]

Nature Biotechnology, 2019
openaire   +2 more sources

Focus on Metagenomics [PDF]

Journal of Biomolecular Techniques : JBT, 2017
Christopher E. Mason, Scott Tighe
openaire   +3 more sources