Construction and Screening of Metagenomic Libraries Derived from Enrichment Cultures: Generation of a Gene Bank for Genes Conferring Alcohol Oxidoreductase Activity on Escherichia coli [PDF]
, 2003 Anja Knietsch +4 more
openalex +1 more source
The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report. [PDF]
, 2016 The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium is a novel, interdisciplinary initiative comprised of experts across many fields, including genomics, data analysis, engineering, public health, and ...
MetaSUB International Consortium
core +1 more source
Food Safety and Health, EarlyView.Escherichia coli pathotype virulotyping to assess if combined top soil improver and water inputs would potentially lead to hybrid strains with shuffled virulence features in ready‐to‐eat vegetables. This is to support the transition toward safe and sustainable food production systems.
Giorgia Barbieri +9 more
wiley +1 more source
Extreme Scale De Novo Metagenome Assembly [PDF]
arXiv, 2018 Metagenome assembly is the process of transforming a set of short, overlapping, and potentially erroneous DNA segments from environmental samples into the accurate representation of the underlying microbiomes's genomes. State-of-the-art tools require big shared memory machines and cannot handle contemporary metagenome datasets that exceed Terabytes in ...
arxiv
Identification and Characterization of Coenzyme B 12 -Dependent Glycerol Dehydratase- and Diol Dehydratase-Encoding Genes from Metagenomic DNA Libraries Derived from Enrichment Cultures [PDF]
, 2003 Anja Knietsch +4 more
openalex +1 more source
DeepMicrobes: taxonomic classification for metagenomics with deep learning
bioRxiv, 2019 Taxonomic classification is a crucial step for metagenomics applications including disease diagnostics, microbiome analyses, and outbreak tracing. Yet it is unknown what deep learning architecture can capture microbial genome-wide features relevant to ...
Qiaoxing Liang +4 more
semanticscholar +1 more source
MetaHMM: A Webserver for Identifying Novel Genes with Specified Functions in Metagenomic Samples [PDF]
arXiv, 2017 The fast and affordable sequencing of large clinical and environmental metagenomic datasets opens up new horizons in medical and biotechnological applications. It is believed that today we have described only about 1\% of the microorganisms on the Earth, therefore, metagenomic analysis mostly deals with unknown species in the samples.
arxiv
Metagenomics: DNA sequencing of environmental samples [PDF]
, 2005 Susannah G. Tringe, Edward M. Rubin
openalex +1 more source
Quantitative metagenomics reveals unique gut microbiome biomarkers in ankylosing spondylitis
Genome Biology, 2017 The assessment and characterization of the gut microbiome has become a focus of research in the area of human autoimmune diseases. Ankylosing spondylitis is an inflammatory autoimmune disease and evidence showed that ankylosing spondylitis may be a ...
Chengping Wen +20 more
semanticscholar +1 more source
International Journal of Cancer, EarlyView.Abstract Increasing evidence links the gut microbiome to carcinogenesis. Disruptions in estrogen regulation by the estrobolome—gut microbiota with estrogen‐related functions—may promote breast cancer. However, precise information on estrobolome targets and their underlying mechanisms is limited. This review identifies relevant targets for measuring the
Ashley H. Larnder +2 more
wiley +1 more source