Results 191 to 200 of about 130,645 (325)

Modular automated high‐throughput isolation and phylogenetic identification of bacteria from complex microbiomes

iMetaOmics, EarlyView.
Metagenomic analysis can generate hypotheses about microbiome interactions and function, yet mechanistic understanding is only possible through precise experimentation manipulating its microbiota composition. The high‐throughput isolation of microbiome members thus represents a core resource in this field of research.
Rubén Chaboy‐Cansado, Silvia Talavera‐Marcos, Ramón Gallego‐Simón, Paula Cobeta, Gabriel Roscales, Alberto Rastrojo, Daniel Aguirre de Cárcer   +6 more
wiley   +1 more source

Distinct functional and compositional properties in the gut microbiome of children with acute lymphoblastic leukaemia identified by shotgun metagenomics. [PDF]

Sci Rep
Muratore E, Conti G, Fabbrini M, Zama D, Decembrino N, Muggeo P, Mura R, Perruccio K, Leardini D, Barone M, Zecca M, Cesaro S, Brigidi P, Turroni S, Masetti R.   +14 more
europepmc   +1 more source

HiFi based metagenomic assembly strategy provides accuracy near isolated genome resolution in MAG assembly

iMetaOmics, EarlyView.
Recovering high‐contiguity, circular bacterial genomes from complex microbiomes (e.g., gut) is challenged by limitations of short‐read and error‐prone long‐read sequencing. This study comprehensively compares PacBio High‐Fidelity (HiFi) sequencing‐based metagenome‐assembled genomes (MAGs) against Illumina MAGs, Oxford Nanopore Technologies (ONT) MAGs ...
Feilong Deng, Yanhua Han, Minghui Li, Yunjuan Peng, Jianmin Chai, Guan Yang, Ying Li, Jiangchao Zhao   +7 more
wiley   +1 more source

Revolutionizing endocarditis diagnosis: AI meets metagenomics for rare <i>Bartonella</i> detection. [PDF]

Ann Med Surg (Lond)
Muhammad Abdur Rehman A, Rizwan MH, Khalid M, Talha M, Waafira A.   +4 more
europepmc   +1 more source

Distinctive metabolic disturbances associated with redox homeostasis, nervous and hormonal functions during gut microbial enrichment upon polystyrene microplastic exposure

iMetaOmics, EarlyView.
Microplastic‐induced gut microbial enrichment was dominated by bacteria within Eubacteriales, correlated with the virome, and accompanied by colitis. The polyamine synthetic pathway was activated to maintain glutathionylspermidine homeostasis, concurrent with decreases in pathways involved in the production of energy and reactive oxygen species under ...
Guozhu Ye, Zeming Wu, Guoyou Chen, Xuyi Liu, Yifang Duan, Minghui Li, Qiansheng Huang   +6 more
wiley   +1 more source

Metagenomics approach to predict antibiotic resistance genes in sputum samples of adult people with cystic fibrosis: a pilot study. [PDF]

Microbiol Spectr
van Scheijen S, Neerincx AH, Weersink EJM, Altenburg J, Majoor C, van Muijlwijk-Koezen JE, Maitland-van der Zee AH, Abdel-Aziz MI, Amsterdam Mucociliary Clearance Disease Research Group.   +8 more
europepmc   +1 more source

Additional file 11 of Detection and discovery of plant viruses in soybean by metagenomic sequencing

, 2022
Manjula G. Elmore, Carol L. Groves, M. R. Hajimorad, Tracey P. Stewart, Mikaela A. Gaskill, Kiersten Wise, Edward J. Sikora, Nathan M. Kleczewski, Damon L. Smith, Daren S. Mueller, Steven A. Whitham   +10 more
openalex   +1 more source

RTTAP: Empowering metatranscriptomic data analysis with a read‐based total‐infectome taxonomic solution

iMetaOmics, EarlyView.
Metatranscriptomic data analysis is a complex task due to its sheer volume and the need for sophisticated bioinformatics tools. To address this, we developed the Read‐based Total‐infectome Taxonomic Analysis Pipeline (RTTAP), an automated pipeline for metatranscriptomic data analysis that eliminates the need for users to manually select databases ...
Wei Jiang, Herui Liao, Mang Shi, Liangjun Chen, Yanni Sun   +4 more
wiley   +1 more source

How sequencing technology shapes our understanding of river water microbiomes and resistomes: a comparative study. [PDF]

Appl Environ Microbiol
Hu J, Blazier JC, Gitter A, Gregory LF, Gentry TJ.   +4 more
europepmc   +1 more source

Metagenomic Analysis of Bacterial Microflora in Dental and Atherosclerotic Plaques of Patients With Internal Carotid Artery Stenosis [PDF]

Ayako Sato, Shintaro Arai, Kenji Sumi, Haruka Fukamachi, Satoko Miyake, Manami Ozawa, Mie Myers, Yasubumi Maruoka, Katsuyoshi Shimizu, Tohru Mizutani, Hirotaka Kuwata   +10 more
openalex   +1 more source