Results 261 to 270 of about 72,279 (314)

Validating a Target‐Enrichment Design for Capturing Uniparental Haplotypes in Ancient Domesticated Animals

Molecular Ecology Resources, EarlyView.
ABSTRACT In the last three decades, DNA sequencing of ancient animal osteological assemblages has become an important tool complementing standard archaeozoological approaches to reconstruct the history of animal domestication. However, osteological assemblages of key archaeological contexts are not always available or do not necessarily preserve enough
Kuldeep D. More, Ophélie Lebrasseur, Jaime Lira Garrido, Andaine Seguin‐Orlando, Emmanuel Discamps, Oscar Estrada, Laure Tonasso‐Calvière, Loreleï Chauvey, Gaëtan Tressières, Stéphanie Schiavinato, Morgane Gibert, Horacio Padula, Horacio Chiavazza, Pablo M. Fernández, Nicolás M. Guardia, Caroline Borges, Stéphane Bertani, Juan Contreras‐Mancilla, Diana Allccarima‐Crisóstomo, Miguel Fhon, Eric Barrey, Léa Charliquart, Emilie Robbe, Thibault de Noblet, Rinat Zhumatayev, Samat Shakenov, Emmanuelle Vila, Rémi Berthon, Marjan Mashkour, Roya Khazaeli, Ahmad Nikgoftar, Ali A. Vahdati, Pavel Kosintsev, Jean‐Luc Houle, Jamsranjav Bayarsaikhan, Jaroslaw Wilczynski, Magdalena Moskal‐del Hoyo, Marek Nowak, William Taylor, Adrian Bălășescu, Roxana Dobrescu, Norbert Benecke, Benjamin Arbuckle, Sharon Steadman, Gregory McMahon, Petra Rajić Šikanjić, Marcel Buric, Tajana Trbojević Vukičević, Nadir Alvarez, Jean‐Christophe Castel, Myriam Boudadi‐Maligne, Bastiaan Star, Julian Robert Post‐Melbye, Christian Løchsen Rødsrud, David W. G. Stanton, Sophy Charlton, Victoria E. Mullin, Kevin G. Daly, Nohemi Sala Burgos, Adrian Pablos, Love Dalen, Daniel G. Bradley, Laurent Frantz, Greger Larson, Ludovic Orlando   +64 more
wiley   +1 more source

Genome-Resolved Metatranscriptomics Provide Insights on Immigration Influence in Structuring Microbial Community Assembly of a Full-Scale Aerobic Granular Sludge Plant. [PDF]

Environ Sci Technol
Mohamed AYA, Gill L, Monleon A, Pronk M, van Loosdrecht M, Saikaly PE, Ali M.   +6 more
europepmc   +1 more source

Ancient Microbiomes as Mirrored by DNA Extracted From Century‐Old Herbarium Plants and Associated Soil

Molecular Ecology Resources, EarlyView.
ABSTRACT Numerous specimens stored in natural history collections have been involuntarily preserved together with their associated microbiomes. We propose exploiting century‐old soils occasionally found on the roots of herbarium plants to assess the diversity of ancient soil microbial communities originally associated with these plants.
Gianluca Grasso, Régis Debruyne, Martino Adamo, Olivier Rué, Franck Lejzerowicz, Lucie Bittner, Valeria Bianciotto, Roland Marmeisse   +7 more
wiley   +1 more source

VBayesMM: variational Bayesian neural network to prioritize important relationships of high-dimensional microbiome multiomics data. [PDF]

Brief Bioinform
Dang T, Lysenko A, Boroevich KA, Tsunoda T.   +3 more
europepmc   +1 more source

The Impact of Whole‐Animal Fluid Preservation on the Observed Gut Microbiome of Vertebrates: Implications for the Use of Museum Specimens in Microbiome Research

Molecular Ecology Resources, EarlyView.
ABSTRACT The vertebrate gut houses diverse microbial communities that provide insights into their host's ecological and evolutionary histories. Nevertheless, microbiome research has not been distributed equally across host taxonomy, geography and timescales. The millions of fluid‐preserved specimens stored in natural history museums worldwide represent
Samantha S. Fontaine, Stevie R. Kennedy‐Gold, Kurt J. Regester, Jennifer A. Sheridan, Kevin D. Kohl   +4 more
wiley   +1 more source

Enhancing infectious intestinal disease diagnosis through metagenomic and metatranscriptomic sequencing of 1000 human diarrhoeal samples. [PDF]

Genome Med
Cunningham-Oakes E, Perez-Sepulveda BM, Li Y, Hinton JCD, Nelson CA, McIntyre KM, Wardeh M, Haldenby S, Gregory R, Iturriza-Gómara M, Hertz-Fowler C, O'Brien SJ, Cunliffe NA, Darby AC, INTEGRATE consortium.   +14 more
europepmc   +1 more source

A Practical Comparison of Short‐ and Long‐Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples

Molecular Ecology Resources, EarlyView.
ABSTRACT Short‐read metabarcoding analysis is the gold standard for accessing partial 16S and ITS genes with high read quality. With the advent of long‐read sequencing, the amplification of full‐length target genes is possible, but with low read accuracy.
Coralie Rousseau, Nicolas Henry, Sylvie Rousvoal, Gwenn Tanguy, Erwan Legeay, Catherine Leblanc, Simon M. Dittami   +6 more
wiley   +1 more source

Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats. [PDF]

Nat Microbiol
Sereika M, Mussig AJ, Jiang C, Knudsen KS, Jensen TBN, Petriglieri F, Yang Y, Jørgensen VR, Delogu F, Sørensen EA, Nielsen PH, Singleton CM, Hugenholtz P, Albertsen M.   +13 more
europepmc   +1 more source

Advancing Gut Microbiome Research: The Shift from Metagenomics to Multi-Omics and Future Perspectives. [PDF]

J Microbiol Biotechnol
Yang SY, Han SM, Lee JY, Kim KS, Lee JE, Lee DW.   +5 more
europepmc   +1 more source

Dysbiosis of Gut Microbiota in Microscopic Colitis: Diagnostic and Therapeutic Implications. [PDF]

Diagnostics (Basel)
Dragasevic S, Nikolic A, Zgradic S, Stojkovic Lalosevic M, Stojkovic S, Matovic Zaric V, Lukic S, Glisic T, Kmezic S, Saponjski D, Popovic D.   +10 more
europepmc   +1 more source