Results 21 to 30 of about 117,934 (343)

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

open access: yesNature Communications, 2021
Recent studies have demonstrated that drought leads to dramatic, highly conserved shifts in the root microbiome. At present, the molecular mechanisms underlying these responses remain largely uncharacterized.
Ling Xu   +20 more
semanticscholar   +1 more source

Starch and Cellulose Degradation in the Rumen and Applications of Metagenomics on Ruminal Microorganisms

open access: yesAnimals, 2022
Simple Summary Starch and cellulose are the principal components in diets for dairy cows worldwide, providing the primary energy to the rumen microorganisms as well as the host.
D. Hua   +3 more
semanticscholar   +1 more source

Metagenomics: A Tool for Exploring Key Microbiome With the Potentials for Improving Sustainable Agriculture

open access: yesFrontiers in Sustainable Food Systems, 2022
Microorganisms are immense in nature and exist in every imaginable ecological niche, performing a wide range of metabolic processes. Unfortunately, using traditional microbiological methods, most microorganisms remain unculturable.
B. Nwachukwu, O. Babalola
semanticscholar   +1 more source

Analysis and Interpretation of metagenomics data: an approach

open access: yesBiological Procedures Online, 2022
Advances in next-generation sequencing technologies have accelerated the momentum of metagenomic studies, which is increasing yearly. The metagenomics field is one of the versatile applications in microbiology, where any interaction in the environment ...
Gauri S. Navgire   +7 more
semanticscholar   +1 more source

VSEARCH: a versatile open source tool for metagenomics

open access: yesPeerJ, 2016
Background VSEARCH is an open source and free of charge multithreaded 64-bit tool for processing and preparing metagenomics, genomics and population genomics nucleotide sequence data.
Torbjørn Rognes   +4 more
semanticscholar   +1 more source

Combination of Whole Genome Sequencing and Metagenomics for Microbiological Diagnostics

open access: yesInternational Journal of Molecular Sciences, 2022
Whole genome sequencing (WGS) provides the highest resolution for genome-based species identification and can provide insight into the antimicrobial resistance and virulence potential of a single microbiological isolate during the diagnostic process.
Srinithi Purushothaman   +2 more
semanticscholar   +1 more source

Characterisation of three novel α-L-arabinofuranosidases from a compost metagenome

open access: yesBMC Biotechnology, 2019
Background The importance of the accessory enzymes such as α-L-arabinofuranosidases (AFases) in synergistic interactions within cellulolytic mixtures has introduced a paradigm shift in the search for hydrolytic enzymes.
Brent Fortune   +5 more
doaj   +1 more source

Gut microbiota shifts favorably with delivery of handwashing with soap and water treatment intervention in a prospective cohort (CHoBI7 trial)

open access: yesJournal of Health, Population and Nutrition, 2023
Background Cholera can result in the expulsion of important microbiota from the gut and result in death if left untreated. The disease transmits mainly via drinking water carrying Vibrio cholerae; and household contacts (HHC) of cholera patients are at ...
Shirajum Monira   +18 more
doaj   +1 more source

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

open access: yesMicrobiome, 2017
The accuracy of microbial community surveys based on marker-gene and metagenomic sequencing (MGS) suffers from the presence of contaminants—DNA sequences not truly present in the sample.
N. M. Davis   +4 more
semanticscholar   +1 more source

Fast and sensitive taxonomic classification for metagenomics with Kaiju

open access: yesNature Communications, 2016
Metagenomics emerged as an important field of research not only in microbial ecology but also for human health and disease, and metagenomic studies are performed on increasingly larger scales.
P. Menzel, K. Ng, A. Krogh
semanticscholar   +1 more source

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