Results 61 to 70 of about 162,178 (247)
Metagenomics for taxonomy profiling: tools and approaches
Bioengineered, 2020 Statement of Retraction We have retracted the following article: Mukesh Kumar Awasthi, B. Ravindran, Surendra Sarsaiya, Hongyu Chen, Steven Wainaina, Ekta Singh, Tao Liu, Sunil Kumar, Ashok Pandey, Lal Singh & Zengqiang Zhang, “Metagenomics for taxonomy ...
Mukesh Kumar Awasthi +10 more
semanticscholar +1 more source
Pathology and viral metagenomics, a recent history [PDF]
, 2013 Human, animal and plant viral pathologies have greatly benefited from recent metagenomics development. Viral metagenomics is a culture-independent approach used to investigate the complete viral genetic populations of a sample.
Albina, Emmanuel +5 more
core
Spaced seeds improve k-mer-based metagenomic classification [PDF]
, 2015 Metagenomics is a powerful approach to study genetic content of environmental samples that has been strongly promoted by NGS technologies. To cope with massive data involved in modern metagenomic projects, recent tools [4, 39] rely on the analysis of k ...
Brinda, Karel +2 more
core +2 more sources
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
Nature Methods, 2017 Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome data, but a lack of consensus about benchmarking complicates performance assessment.
A. Sczyrba +66 more
semanticscholar +1 more source
High‐Throughput Metagenomics for Identification of Pathogens in the Clinical Settings
Small Methods, 2020 The application of sequencing technology is shifting from research to clinical laboratories owing to rapid technological developments and substantially reduced costs.
Na Li +5 more
semanticscholar +1 more source
IL17eScan: A Tool for the Identification of Peptides Inducing IL-17 Response
Frontiers in Immunology, 2017 IL-17 cytokines are pro-inflammatory cytokines and are crucial in host defense against various microbes. Induction of these cytokines by microbial antigens has been investigated in the case of ischemic brain injury, gingivitis, candidiasis, autoimmune ...
Sudheer Gupta +3 more
doaj +1 more source
Frontiers in Microbiology, 2020 Majority of metagenomic studies in the last decade have focused on revealing the gut microbiomes of humans, rodents, and ruminants; however, the gut microbiome and genic information (gene catalog) of large felids such as Panthera species are largely ...
Parul Mittal +4 more
doaj +1 more source
MicrobiologyOpen, 2021 Tularemia is a zoonotic disease of global proportions. Francisella tularensis subspecies tularensis (type A) and holarctica (type B) cause disease in healthy humans, with type A infections resulting in higher mortality.
Lisa M. Matz, Joseph F. Petrosino
doaj +1 more source
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
Genome Biology, 2018 False-positive identifications are a significant problem in metagenomics classification. We present KrakenUniq, a novel metagenomics classifier that combines the fast k-mer-based classification of Kraken with an efficient algorithm for assessing the ...
F. Breitwieser +2 more
semanticscholar +1 more source
Metagenomics for Bacteriology [PDF]
, 2015 The study of bacteria, or bacteriology, has gone through transformative waves since its inception in the 1600s. It all started by the visualization of bacteria using light microscopy by Antonie van Leeuwenhoek, when he first described “animalcules ...
del Castillo, Erika, Izard, Jacques
core +1 more source