Results 61 to 70 of about 178,547 (361)

Pattern-Recognition Receptors and Cervical Microbiome in Patients with Early Miscarriages

International Journal of Inflammation
Early miscarriages are one of the main causes of reproductive losses. The objective of this study was to estimate Toll- and NOD-like receptors mRNA expression levels and their correlation with microbiome composition in the endocervix of patients with 1st
Mariya V. Gryaznova, Olesya N. Kozarenko, Victoria M. Ivannikova, Yuliya D. Smirnova, Inna Y. Burakova, Oxana B. Altukhova, Natalia I. Samborskaya, Mikhail Y. Syromyatnikov, Alexander Y. Maslov, Olga P. Lebedeva   +9 more
doaj   +1 more source

The gut mycobiome of the Human Microbiome Project healthy cohort

Microbiome, 2017
Background Most studies describing the human gut microbiome in healthy and diseased states have emphasized the bacterial component, but the fungal microbiome (i.e., the mycobiome) is beginning to gain recognition as a fundamental part of our microbiome ...
Andrea K. Nash, Thomas A. Auchtung, Matthew C. Wong, Daniel P. Smith, Jonathan R. Gesell, Matthew C. Ross, Christopher J. Stewart, Ginger A. Metcalf, Donna M. Muzny, Richard A. Gibbs, Nadim J. Ajami, Joseph F. Petrosino   +11 more
doaj   +1 more source

Time series genome-centric analysis unveils bacterial response to operational disturbance in activated sludge [PDF]

, 2019
Understanding ecosystem response to disturbances and identifying the most critical traits for the maintenance of ecosystem functioning are important goals for microbial community ecology.
Erijman, Leonardo, Figuerola, Eva Lucia Margarita, Guerrero, Leandro Demián, Orellana, Esteban, Pérez, María Victoria   +4 more
core   +1 more source

Unraveling metagenomics through long-read sequencing: a comprehensive review

Journal of Translational Medicine
The study of microbial communities has undergone significant advancements, starting from the initial use of 16S rRNA sequencing to the adoption of shotgun metagenomics.
Chankyung Kim, M. Pongpanich, T. Porntaveetus   +2 more
semanticscholar   +1 more source

Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification

Bioinform., 2019
SUMMARY Pavian is a web application for exploring classification results from metagenomics experiments. With Pavian, researchers can analyze, visualize, and transform results from various classifiers - such as Kraken, Centrifuge, and MethaPhlAn - using ...
F. Breitwieser, S. Salzberg
semanticscholar   +1 more source

Refractory Status Epilepticus Treated With Bilateral Pulvinar Deep Brain Stimulation—A Case Study

Annals of Clinical and Translational Neurology, EarlyView.
ABSTRACT New‐onset refractory status epilepticus (NORSE) arises without an identifiable cause or prior epilepsy history, with a 16%–27% mortality rate and significant long‐term neurological sequelae. Neuromodulation such as deep brain stimulation (DBS) targeting the anterior and centromedian thalamic nuclei has shown promise when the traditional ...
Mengxuan Tang, Amerta Bai, Felipe Rodridgues Marques Ferreira, Sandipan Pati, Thaddeus Walczak, Benjamin Miller, Oladi Bentho, Thomas Henry, Ilo Leppik, Minoo Shams, Zhiyi Sha, Zachary Sanger, Theoden I. Netoff, Thomas Lisko, Anant Naik, Robert McGovern III, Sima Patel   +16 more
wiley   +1 more source

An overlooked phenomenon: complex interactions of potential error sources on the quality of bacterial de novo genome assemblies

BMC Genomics
Background Parameters adversely affecting the contiguity and accuracy of the assemblies from Illumina next-generation sequencing (NGS) are well described.
Zoltán Rádai, Alex Váradi, Péter Takács, Nikoletta Andrea Nagy, Nicholas Schmitt, Eszter Prépost, Gábor Kardos, Levente Laczkó   +7 more
doaj   +1 more source

Metagenomics for Bacteriology [PDF]

, 2015
The study of bacteria, or bacteriology, has gone through transformative waves since its inception in the 1600s. It all started by the visualization of bacteria using light microscopy by Antonie van Leeuwenhoek, when he first described “animalcules ...
del Castillo, Erika, Izard, Jacques
core   +1 more source

The Computational Diet: A Review of Computational Methods Across Diet, Microbiome, and Health. [PDF]

, 2020
Food and human health are inextricably linked. As such, revolutionary impacts on health have been derived from advances in the production and distribution of food relating to food safety and fortification with micronutrients. During the past two decades,
Eetemadi, Ameen, Kim, Minseung, Pereira, Beatriz Merchel Piovesan, Rai, Navneet, Schmitz, Harold, Tagkopoulos, Ilias   +5 more
core  

Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea [PDF]

, 2016
Cell sorting coupled with single-cell genomics is a powerful tool to circumvent cultivation of microorganisms and reveal microbial ‘dark matter’. Single-cell Raman spectra (SCRSs) are label-free biochemical ‘fingerprints’ of individual cells, which can ...
Davison, Paul A., Frentrup, Martinique, Huang, Wei E., Hunter, C. Neil, Kaster, Anne-Kristin, Murrell, J. Colin, Preston, Gail M., Song, Yanqing, Song, Yizhi, Thompson, Ian P., Vollmers, John, Yin, Huabing   +11 more
core   +4 more sources