Results 1 to 10 of about 5,063 (236)

The Viral Fraction Metatranscriptomes of Lake Baikal

Microorganisms, 2022
This article characterises viral fraction metatranscriptomes (smaller than 0.2 µm) from the pelagic zone of oligotrophic Lake Baikal (Russia). The study revealed the dominance of transcripts of DNA viruses: bacteriophages and algal viruses. We identified
Olga I Belykh, Irina Tikhonova, Sergey A Potapov   +2 more
exaly   +7 more sources

Arbuscular Mycorrhizal Fungal Community Abundance, Functions, and Symbiotic Interactions Revealed by Root Metatranscriptomes [PDF]

iMetaOmics
Arbuscular mycorrhizal (AM) fungal communities are often profiled by metabarcoding, but this approach can bias abundance estimates and provide limited insight into community function and interactions with the host.
John W. Taylor, Cheng Gao, Peilin Chen
exaly   +4 more sources

Mining Metatranscriptomes Reveals a Vast World of Viroid-Like Circular RNAs [PDF]

Cell, 2023
Summary Viroids and viroid-like covalently closed circular (ccc) RNAs are minimal replicators that typically encode no proteins and hijack cellular enzymes for replication. The extent and diversity of viroid-like agents are poorly understood.
Eugene Koonin
exaly   +4 more sources

Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly

BMC Bioinformatics, 2023
Background Diverse communities of microbial eukaryotes in the global ocean provide a variety of essential ecosystem services, from primary production and carbon flow through trophic transfer to cooperation via symbioses.
Arianna I. Krinos, Natalie R. Cohen, Michael J. Follows, Harriet Alexander   +3 more
doaj   +3 more sources

Differential Network Analysis of Oral Microbiome Metatranscriptomes Identifies Community Scale Metabolic Restructuring in Dental Caries.

PNAS Nexus, 2022
Dental caries is a microbial disease and the most common chronic health condition, affecting nearly 3.5 billion people worldwide. In this study, we used a multiomics approach to characterize the supragingival plaque microbiome of 91 Australian children ...
Michelle Böckmann, Toby E Hughes, Richard Saffery   +2 more
exaly   +3 more sources

Metatranscriptomes of activated sludge microbiomes from saline wastewater treatment plant [PDF]

Scientific Data
The activated sludge microbiome (ASM) drives the biological wastewater treatment process in wastewater treatment plants. It has been established in the literature that the ASM is characterized by a high degree of taxonomic and metabolic diversity ...
Asala Mahajna, Bert Geurkink, Ranko Gacesa, Karel J. Keesman, Gert-Jan W. Euverink, Bayu Jayawardhana   +5 more
doaj   +3 more sources

Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere.

MBio, 2018
The continental subsurface is suggested to contain a significant part of the earth’s total biomass. However, due to the difficulty of sampling, the deep subsurface is still one of the least understood ecosystems. Therefore, microorganisms inhabiting this
Emelie Nilsson, Lucile Soler, Xiaofen Wu
exaly   +4 more sources

A high-resolution diel survey of surface ocean metagenomes, metatranscriptomes, and transfer RNA transcripts [PDF]

Scientific Data
The roles of marine microbes in ecosystem processes are inherently linked to their ability to sense, respond, and ultimately adapt to environmental change.
Sarah J. Tucker, Jessika Füssel, Kelle C. Freel, Evan Kiefl, Evan B. Freel, Oscar Ramfelt, Clarisse E. S. Sullivan, Andrian P. Gajigan, Hanako Mochimaru, Mariana Rocha de Souza, Mariko Quinn, Ciara Ratum, Leon L. Tran, Marek Sobczyk, Samuel E. Miller, Florian Trigodet, Karen Lolans, Hilary G. Morrison, Bailey Fallon, Bruno Huettel, Tao Pan, Michael S. Rappé, A. Murat Eren   +22 more
doaj   +3 more sources

Metagenomes and Metatranscriptomes of Activated Sludge From a Sewage Plant, With or Without Aerobic Granule Enrichment.

Genome Announcements, 2017
We report here the metagenomes and metatranscriptomes of activated sludge bioreactors, enriched or not enriched with aerobic granules, at an initial state and after 1 month of incubation.
Gautier Calmin, Julien Crovadore, François Lefort   +2 more
exaly   +4 more sources

Resistant starch type 2 and whole grain maize flours enrich different intestinal bacteria and metatranscriptomes [PDF]

Journal of Functional Foods, 2022
The intestinal microbiota of Sprague-Dawley (SD) rats were investigated following consumption of diets containing refined high-amylose cornstarch (RS), waxy whole-grain flour from maize (WG), or high-amylose whole-grain flour (WG + RS) together with ...
Zachary A. Bendiks, J. Guice, Diana B. Coulon, Anne M. Raggio, Ryan Page, D. Carvajal-Aldaz, Meng Luo, David A. Welsh, B. Marx, Christopher M. Taylor, C. Husseneder, M. Keenan, M. Marco   +12 more
semanticscholar   +2 more sources