Results 1 to 10 of about 4,884 (222)

Current trends inRNAvirus detection through metatranscriptome sequencing data

FEBS Open Bio, 2023
With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled
So Nakagawa, Shōichi Sakaguchi, Atsushi Ogura   +2 more
exaly   +3 more sources

Methodologies for probing the metatranscriptome of grassland soil [PDF]

Journal of Microbiological Methods, 2016
Metatranscriptomics provides an opportunity to identify active microbes and expressed genes in complex soil communities in response to particular conditions.
Aaron Garoutte, Erick Cárdenas, James M Tiedje   +2 more
exaly   +6 more sources

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline. [PDF]

PLoS ONE, 2016
BACKGROUND:Metatranscriptomic landscapes can provide insights in functional relationships within natural microbial communities. Analysis of complex metatranscriptome datasets of these communities poses a considerable bioinformatic challenge since they ...
Mark Davids, Floor Hugenholtz, Vitor Martins dos Santos, Hauke Smidt, Michiel Kleerebezem, Peter J Schaap   +5 more
doaj   +2 more sources

Metatranscriptome Analysis of Bisphenol A-Exposed Aerobic Granular Sludge

Energies, 2021
Understanding of the metabolic pathways connected with a removal of micropollutant bisphenol A (BPA) may help to better design effective wastewater treatment processes.
Agnieszka Cydzik-Kwiatkowska, Piotr Jachimowicz, Cydzik-Kwiatkowska Agnieszka   +2 more
exaly   +3 more sources

Identifying biodegradation pathways of cetrimonium bromide (CTAB) using metagenome, metatranscriptome, and metabolome tri-omics integration

Water Research, 2023
International audienceTraditional research on biodegradation of emerging organic pollutants involves slow and labor-intensive experimentation. Currently, fast-developing metagenome, metatranscriptome, and metabolome technologies promise to expedite ...
Chen-Wei Zheng, Yi-Hao Luo, Yenjung Sean Lai   +2 more
exaly   +2 more sources

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

Journal of Biotechnology, 2012
Zakrzewski M, Goesmann A, Jaenicke S, et al. Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing. Journal of Biotechnology.
Martha Zakrzewski, Alexander Goesmann, Sebastian Jaenicke   +2 more
exaly   +2 more sources

Metatranscriptome analysis of lactic acid bacteria during kimchi fermentation with genome-probing microarrays

International Journal of Food Microbiology, 2009
We constructed genome probing microarrays (GPM) that are specific to 39 lactic acid bacteria (LAB) in an effort to monitor microbial diversity and biological activity during the fermentation of kimchi, a traditional Korean vegetable product known to ...
Young-Do Nam, Ho-Won Chang, Kyoung-Ho Kim   +2 more
exaly   +2 more sources

Profiling the metatranscriptome of the protistan community in Coptotermes formosanus with emphasis on the lignocellulolytic system

Genomics, 2012
The symbiotic protists in the hindgut of lower termites are critical for lignocellulose decomposition. Due to the unculturability of these protists, information on lignocellulases and their abundance within the gut is unavailable.
Shengyue Wang, Xuguo Zhou, Zhihua Zhou   +2 more
exaly   +2 more sources

De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly

BMC Genomics, 2017
Background Scleractinian corals are a vital component of coral reef ecosystems, and of significant cultural and economic value worldwide. As anthropogenic and natural stressors are contributing to a global decline of coral reefs, understanding coral ...
Monika Frazier, Martin Helmkampf, M. Renee Bellinger, Scott M. Geib, Misaki Takabayashi   +4 more
doaj   +2 more sources

Optimising RNA extraction for paddy bulk soil samples for metatranscriptome sequencing. [PDF]

BMC Res Notes
Objective: Extraction of high-quality RNA is crucial for understanding the molecular dynamics of microbiomes in the growth and development of paddy plants.
Sivaprakasam S, Yee Fan T, Kumarasan Y, Hata EM, Vadamalai G, Petersen B, Sicheritz-Pontén T, Parimannan S, Rajandas H.   +8 more
europepmc   +2 more sources