Results 21 to 30 of about 1,783 (178)

Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover

mSystems, 2023
Shorebirds migrate long distances twice annually, which requires intense physiological and morphological adaptations, including the ability to rapidly gain weight via fat deposition at stopover locations.
Kirsten Grond, Artemis S. Louyakis, Sarah M. Hird   +2 more
doaj   +1 more source

In Situ Molecular Ecological Analyses Illuminate Distinct Factors Regulating Formation and Demise of a Harmful Dinoflagellate Bloom

Microbiology Spectrum, 2023
The development and demise of a harmful algal bloom (HAB) are generally regulated by multiple processes; identifying specific critical drivers for a specific bloom is important yet challenging.
Liying Yu, Tangcheng Li, Hongfei Li, Minglei Ma, Ling Li, Senjie Lin   +5 more
doaj   +1 more source

A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets [PDF]

, 2013
Contains fulltext : 119246.pdf (Publisher’s version ) (Open Access)BACKGROUND: Next generation sequencing (NGS) technologies can be applied in complex microbial ecosystems for metatranscriptome analysis by employing direct cDNA ...
Milkha M Leimena, Kleerebezem, M., Mark Davids, Eddy J Smid, Davids, M., Peter J Schaap, Smidt, H., Smid, E.J., Zoetendal, E.G., Hauke Smidt, Boekhorst, J., te, Bartholomeus van den Bogert, Javier Ramiro-Garcia, Michiel Kleerebezem, Erwin G Zoetendal, Jos Boekhorst, Ramiro-Garcia, J., Schaap, P.J., Leimena, M.M., Bogert, B., van den, RAMIRO GARCIA, Javier   +20 more
core   +3 more sources

The Colorectal Cancer Microbiota Alter Their Transcriptome To Adapt to the Acidity, Reactive Oxygen Species, and Metabolite Availability of Gut Microenvironments

mSphere, 2023
The gut microbiome is implicated in the pathology of colorectal cancer (CRC). However, the mechanisms by which the microbiota actively contribute to disease onset and progression remain elusive.
Matthew T. F. Lamaudière, Ramesh Arasaradnam, Gareth D. Weedall, Igor Y. Morozov   +3 more
doaj   +1 more source

Resistance Breeding of Common Bean Shapes the Physiology of the Rhizosphere Microbiome

Frontiers in Microbiology, 2019
The taxonomically diverse rhizosphere microbiome contributes to plant nutrition, growth and health, including protection against soil-borne pathogens.
Lucas William Mendes, Lucas William Mendes, Miriam Gonçalves de Chaves, Mariley de Cassia Fonseca, Rodrigo Mendes, Jos M. Raaijmakers, Jos M. Raaijmakers, Siu Mui Tsai   +7 more
doaj   +1 more source

Exploring the tymovirids landscape through metatranscriptomics data [PDF]

Archives of Virology, 2021
Abstract Tymovirales is an order of viruses with positive-sense, single-stranded RNA genomes that mostly infect plants, but also fungi and insects. The number of tymovirid sequences has been growing in the last few years with the extensive use of high-throughput sequencing platforms.
Nicolás Bejerman, Humberto Debat
openaire   +2 more sources

Metatranscriptomics by In Situ RNA Stabilization Directly and Comprehensively Revealed Episymbiotic Microbial Communities of Deep-Sea Squat Lobsters

mSystems, 2020
Shinkaia crosnieri is an invertebrate that inhabits an area around deep-sea hydrothermal vents in the Okinawa Trough in Japan by harboring episymbiotic microbes as the primary nutrition.
Kaori Motoki, Tomo-o Watsuji, Yoshihiro Takaki, Ken Takai, Wataru Iwasaki   +4 more
doaj   +1 more source

Sixteen Novel Mycoviruses Containing Positive Single-Stranded RNA, Double-Stranded RNA, and Negative Single-Stranded RNA Genomes Co-Infect a Single Strain of Rhizoctonia zeae

Journal of Fungi, 2023
In the present study, sixteen novel RNA mycoviruses co-infecting a single strain of Rhizoctonia zeae (strain D40) were identified and molecularly characterized using metatranscriptome sequencing combined with a method for rapid amplification of cDNA ends.
Siwei Li, Zhihao Ma, Xinyi Zhang, Yibo Cai, Chenggui Han, Xuehong Wu   +5 more
doaj   +1 more source

Microbial Communities and Diversities in Mudflat Sediments Analyzed Using a Modified Metatranscriptomic Method

Frontiers in Microbiology, 2018
Intertidal mudflats are land–sea interaction areas and play important roles in global nutrient cycles. However, a comprehensive understanding of microbial communities in these mudflats remains elusive.
Yong-Wei Yan, Qiu-Yue Jiang, Jian-Gong Wang, Ting Zhu, Bin Zou, Qiong-Fen Qiu, Zhe-Xue Quan   +6 more
doaj   +1 more source

Metatranscriptomic analyses of honey bee colonies [PDF]

Frontiers in Genetics, 2015
Honey bees face numerous biotic threats from viruses to bacteria, fungi, protists, and mites. Here we describe a thorough analysis of microbes harbored by worker honey bees collected from field colonies in geographically distinct regions of Turkey. Turkey is one of the World's most important centers of apiculture, harboring five subspecies of Apis ...
Tozkar, Cansu Özge, EVANS, Jay D., Kence, Meral, Kence, Aykut, HUANG, Qiang   +4 more
openaire   +4 more sources