Results 11 to 20 of about 1,783 (178)

Direct Metatranscriptome RNA-seq and Multiplex RT-PCR Amplicon Sequencing on Nanopore MinION – Promising Strategies for Multiplex Identification of Viable Pathogens in Food

Frontiers in Microbiology, 2020
Viable pathogenic bacteria are major biohazards that pose a significant threat to food safety. Despite the recent developments in detection platforms, multiplex identification of viable pathogens in food remains a major challenge.
Manyun Yang, Alyssa Cousineau, Xiaobo Liu, Yaguang Luo, Daniel Sun, Daniel Sun, Shaohua Li, Shaohua Li, Tingting Gu, Luo Sun, Hayden Dillow, Jack Lepine, Mingqun Xu, Boce Zhang   +13 more
doaj   +1 more source

L. rhamnosus CNCM I-3690 survival, adaptation, and small bowel microbiome impact in human

Gut Microbes, 2023
Fermented foods and beverages are a significant source of dietary bacteria that enter the gastrointestinal (GI) tract. However, little is known about how these microbes survive and adapt to the small intestinal environment.
Edoardo Zaccaria, Tim Klaassen, Annick M.E. Alleleyn, Jos Boekhorst, Christian Chervaux, Tamara Smokvina, Freddy J. Troost, Michiel Kleerebezem   +7 more
doaj   +1 more source

Improved Metabolite Prediction Using Microbiome Data-Based Elastic Net Models

Frontiers in Cellular and Infection Microbiology, 2021
Microbiome data are becoming increasingly available in large health cohorts, yet metabolomics data are still scant. While many studies generate microbiome data, they lack matched metabolomics data or have considerable missing proportions of metabolites ...
Jialiu Xie, Hunyong Cho, Bridget M. Lin, Malvika Pillai, Lara H. Heimisdottir, Dipankar Bandyopadhyay, Fei Zou, Fei Zou, Jeffrey Roach, Kimon Divaris, Kimon Divaris, Di Wu, Di Wu   +12 more
doaj   +1 more source

Phytoplankton cell size control can be affected by photosynthetic light energy utilization

Frontiers in Microbiology, 2022
Phytoplankton cell size is well known as an essential functional trait, but its control factors are still unclear. Considering light provides the necessary energy for phytoplankton survival, we hypothesized that photosynthetic light energy utilization ...
Wanzhu Li, Baoli Wang, Jing Xiao, Meiling Yang, Sheng Xu, Cong-Qiang Liu   +5 more
doaj   +1 more source

Mouse Oral Metatranscriptome

, 2022
List of genes expressed in the mouse oral cavity based on swabbing and metatranscriptome sequence ...
Susan Joseph (9076760)
core   +1 more source

Use of Metatranscriptomics in Microbiome Research [PDF]

Bioinformatics and Biology Insights, 2016
The human intestinal microbiome is a microbial ecosystem that expresses as many as 100 times more genes than the human host, thereby constituting an important component of the human holobiome, which contributes to multiple health and disease processes.
Stavros Bashiardes, Gili Zilberman-Schapira, Eran Elinav   +2 more
openaire   +4 more sources

Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle

Frontiers in Microbiology, 2020
Light is an important factor for the growth of planktonic organisms, and many of them depend on the diurnal light/dark cycle to regulate key metabolic processes.
Stephanie Trench-Fiol, Patrick Fink, Patrick Fink, Patrick Fink   +3 more
doaj   +1 more source

Discrimination of Bacterial Community Structures among Healthy, Gingivitis, and Periodontitis Statuses through Integrated Metatranscriptomic and Network Analyses

mSystems, 2021
Periodontal disease is an inflammatory condition caused by polymicrobial infection. The inflammation is initiated at the gingiva (gingivitis) and then extends to the alveolar bone, leading to tooth loss (periodontitis).
Takashi Nemoto, Takahiko Shiba, Keiji Komatsu, Takayasu Watanabe, Masahiro Shimogishi, Masaki Shibasaki, Tatsuro Koyanagi, Takahiko Nagai, Sayaka Katagiri, Yasuo Takeuchi, Takanori Iwata   +10 more
doaj   +1 more source

Gene finding in metatranscriptomic sequences [PDF]

BMC Bioinformatics, 2014
Metatranscriptomic sequencing is a highly sensitive bioassay of functional activity in a microbial community, providing complementary information to the metagenomic sequencing of the community. The acquisition of the metatranscriptomic sequences will enable us to refine the annotations of the metagenomes, and to study the gene activities and their ...
Wazim Ismail, Yuzhen Ye, Haixu Tang
openaire   +3 more sources

Metatranscriptome assembly of Leontynka pallida AMAZONIE

, 2022
Metatranscriptome of Leontynka pallida strain AMAZONIE; monoeukaryotic culture containing various ...
Tomas Panek (12035183)
core   +1 more source