Results 31 to 40 of about 1,783 (178)
Advances and Challenges in Metatranscriptomic Analysis
Frontiers in Genetics, 2019 Sequencing-based analyses of microbiomes have traditionally focused on addressing the question of community membership and profiling taxonomic abundance through amplicon sequencing of 16 rRNA genes. More recently, shotgun metagenomics, which involves the random sequencing of all genomic content of a microbiome, has dominated this arena due to ...
Migun Shakya +2 more
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Metatranscriptomic census of active protists in soils [PDF]
The ISME Journal, 2015 Abstract The high numbers and diversity of protists in soil systems have long been presumed, but their true diversity and community composition have remained largely concealed. Traditional cultivation-based methods miss a majority of taxa, whereas molecular barcoding approaches employing PCR introduce significant biases in reported ...
Geisen, S. +6 more
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mSystems, 2022 Mineral nitrogen (N) is a major nutrient showing strong fluctuations in the environment due to anthropogenic activities. The acquisition and translocation of N to forest trees are achieved mainly by highly diverse ectomycorrhizal fungi (EMF) living in ...
Carmen Alicia Rivera Pérez +4 more
doaj +1 more source
MetaTrans: an open-source pipeline for metatranscriptomics [PDF]
Scientific Reports, 2016 Abstract To date, meta-omic approaches use high-throughput sequencing technologies, which produce a huge amount of data, thus challenging modern computers. Here we present MetaTrans, an efficient open-source pipeline to analyze the structure and functions of active microbial communities using the power of multi ...
Martinez, Xavier +8 more
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The Viral Fraction Metatranscriptomes of Lake Baikal
Microorganisms, 2022 This article characterises viral fraction metatranscriptomes (smaller than 0.2 µm) from the pelagic zone of oligotrophic Lake Baikal (Russia). The study revealed the dominance of transcripts of DNA viruses: bacteriophages and algal viruses. We identified transcripts similar to Pithovirus sibericum, a nucleocytoplasmic large DNA virus (NCLDV) isolated ...
Sergey Potapov +5 more
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Archaea: An under-estimated kingdom in livestock animals
Frontiers in Veterinary Science, 2022 Archaea are considered an essential group of gut microorganisms in both humans and animals. However, they have been neglected in previous studies, especially those involving non-ruminants.
Yunjuan Peng +19 more
doaj +1 more source
Metatranscriptome of the Oral Microbiome in Health and Disease [PDF]
Journal of Dental Research, 2018 The last few decades have witnessed an increasing interest in studying the human microbiome and its role in health and disease. The focus of those studies was mainly the characterization of changes in the composition of the microbial communities under different conditions.
J. Solbiati, J. Frias-Lopez
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Frontiers in Microbiology, 2019 Diatoms and dinoflagellates dominate coastal marine phytoplankton communities as major players of marine biogeochemical cycles and their seasonal succession often leads to harmful algal blooms (HABs).
Yaqun Zhang +8 more
doaj +1 more source
ESM2 Bleaching metatranscriptome transcriptome
, 2015 Electronic supplementary material 2.
Weil, Ernesto +13 more
core +1 more source
Landscapes of Enteric Virome Signatures in Early-Weaned Piglets
Microbiology Spectrum, 2022 Diarrhea caused by early-weaning-induced stress can increase mortality rates and reduce growth performance of piglets, seriously harming the livestock industry.
Shiyu Tao +3 more
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