Results 31 to 40 of about 4,884 (222)

Metatranscriptome assembly of Leontynka pallida AMAZONIE

, 2022
Metatranscriptome of Leontynka pallida strain AMAZONIE; monoeukaryotic culture containing various ...
Tomas Panek (12035183)
core   +1 more source

In Situ Molecular Ecological Analyses Illuminate Distinct Factors Regulating Formation and Demise of a Harmful Dinoflagellate Bloom

Microbiology Spectrum, 2023
The development and demise of a harmful algal bloom (HAB) are generally regulated by multiple processes; identifying specific critical drivers for a specific bloom is important yet challenging.
Liying Yu, Tangcheng Li, Hongfei Li, Minglei Ma, Ling Li, Senjie Lin   +5 more
doaj   +1 more source

Gene finding in metatranscriptomic sequences [PDF]

BMC Bioinformatics, 2014
Metatranscriptomic sequencing is a highly sensitive bioassay of functional activity in a microbial community, providing complementary information to the metagenomic sequencing of the community. The acquisition of the metatranscriptomic sequences will enable us to refine the annotations of the metagenomes, and to study the gene activities and their ...
Wazim Ismail, Yuzhen Ye, Haixu Tang
openaire   +2 more sources

The Colorectal Cancer Microbiota Alter Their Transcriptome To Adapt to the Acidity, Reactive Oxygen Species, and Metabolite Availability of Gut Microenvironments

mSphere, 2023
The gut microbiome is implicated in the pathology of colorectal cancer (CRC). However, the mechanisms by which the microbiota actively contribute to disease onset and progression remain elusive.
Matthew T. F. Lamaudière, Ramesh Arasaradnam, Gareth D. Weedall, Igor Y. Morozov   +3 more
doaj   +1 more source

Resistance Breeding of Common Bean Shapes the Physiology of the Rhizosphere Microbiome

Frontiers in Microbiology, 2019
The taxonomically diverse rhizosphere microbiome contributes to plant nutrition, growth and health, including protection against soil-borne pathogens.
Lucas William Mendes, Lucas William Mendes, Miriam Gonçalves de Chaves, Mariley de Cassia Fonseca, Rodrigo Mendes, Jos M. Raaijmakers, Jos M. Raaijmakers, Siu Mui Tsai   +7 more
doaj   +1 more source

Metatranscriptomics by In Situ RNA Stabilization Directly and Comprehensively Revealed Episymbiotic Microbial Communities of Deep-Sea Squat Lobsters

mSystems, 2020
Shinkaia crosnieri is an invertebrate that inhabits an area around deep-sea hydrothermal vents in the Okinawa Trough in Japan by harboring episymbiotic microbes as the primary nutrition.
Kaori Motoki, Tomo-o Watsuji, Yoshihiro Takaki, Ken Takai, Wataru Iwasaki   +4 more
doaj   +1 more source

Nasopharyngeal metatranscriptome profiles of infants with bronchiolitis and risk of childhood asthma: a multicentre prospective study

, 2022
BACKGROUND: Bronchiolitis is not only the leading cause of hospitalisation in US infants but also a major risk factor for asthma development. Growing evidence supports clinical heterogeneity within bronchiolitis.
Raita, Yoshihiko, Ramos-Tapia, Ignacio, Freishtat, Robert J, Gern, James E, Mansbach, Jonathan M, Hasegawa, Kohei, Camargo, Carlos A, Pérez-Losada, Marcos, Hahn, Andrea, Bochkov, Yury A, Castro-Nallar, Eduardo, Zhu, Zhaozhong, Stearrett, Nathaniel   +12 more
core   +1 more source

Microbial Communities and Diversities in Mudflat Sediments Analyzed Using a Modified Metatranscriptomic Method

Frontiers in Microbiology, 2018
Intertidal mudflats are land–sea interaction areas and play important roles in global nutrient cycles. However, a comprehensive understanding of microbial communities in these mudflats remains elusive.
Yong-Wei Yan, Qiu-Yue Jiang, Jian-Gong Wang, Ting Zhu, Bin Zou, Qiong-Fen Qiu, Zhe-Xue Quan   +6 more
doaj   +1 more source

Sixteen Novel Mycoviruses Containing Positive Single-Stranded RNA, Double-Stranded RNA, and Negative Single-Stranded RNA Genomes Co-Infect a Single Strain of Rhizoctonia zeae

Journal of Fungi, 2023
In the present study, sixteen novel RNA mycoviruses co-infecting a single strain of Rhizoctonia zeae (strain D40) were identified and molecularly characterized using metatranscriptome sequencing combined with a method for rapid amplification of cDNA ends.
Siwei Li, Zhihao Ma, Xinyi Zhang, Yibo Cai, Chenggui Han, Xuehong Wu   +5 more
doaj   +1 more source

Metatranscriptomic analyses of honey bee colonies [PDF]

Frontiers in Genetics, 2015
Honey bees face numerous biotic threats from viruses to bacteria, fungi, protists, and mites. Here we describe a thorough analysis of microbes harbored by worker honey bees collected from field colonies in geographically distinct regions of Turkey. Turkey is one of the World's most important centers of apiculture, harboring five subspecies of Apis ...
Tozkar, Cansu Özge, EVANS, Jay D., Kence, Meral, Kence, Aykut, HUANG, Qiang   +4 more
openaire   +4 more sources