Results 41 to 50 of about 1,783 (178)

Metatranscriptome assembly filtered annotated

, 2017
Transcripts from Montastrea cavernosa metatranscriptome following assembly with Trinity/BinPacker/Tranfuse, BLAST-filtering, and annotation with ...
Kathleen M. Morrow (307779), M. Sabrina Pankey (372836), Jessica K. Jarett (5017343), Matthew D. MacManes (132077), Michael P. Lesser (416458)   +4 more
core   +1 more source

Metatranscriptome profiling of a harmful algal bloom [PDF]

Harmful Algae, 2014
Metagenomic methods provide a powerful means to investigate complex ecological phenomena. Developed originally for study of Bacteria and Archaea, the application of these methods to eukaryotic microorganisms is yet to be fully realized. Most prior environmental molecular studies of eukaryotes have relied heavily on PCR amplification with eukaryote ...
Endymion D, Cooper, Bastian, Bentlage, Theodore R, Gibbons, Tsvetan R, Bachvaroff, Charles F, Delwiche   +4 more
openaire   +2 more sources

Understanding human health through metatranscriptomics

Trends in Molecular Medicine, 2023
Metatranscriptomics has revolutionized our ability to explore and understand transcriptional programs in microbial communities. Moreover, it has enabled us to gain deeper and more specific insight into the microbial activities in human gut, respiratory, oral, and vaginal communities. Perhaps the most important contribution of metatranscriptomics arises,
Teija Ojala, Esko Kankuri, Matti Kankainen   +2 more
openaire   +2 more sources

ESM6 Annotations metatranscriptome

, 2015
Electronic supplementary material 6.
Weil, Ernesto, Laura D. Mydlarz (43555), Medina, Mónica, Burge, Colleen A., Bishoy Kamel (3272019), Jorge H. Pinzón (3272016), Ernesto Weil (237456), Mydlarz, Laura D., Colleen A. Burge (770433), Harvell, C. Drew, C. Drew Harvell (43558), Kamel, Bishoy, Mónica Medina (44821), Pinzón, Jorge H.   +13 more
core   +1 more source

Nasopharyngeal metatranscriptome profiles of infants with bronchiolitis and risk of childhood asthma: a multicentre prospective study

, 2021
BACKGROUND: Bronchiolitis is not only the leading cause of hospitalisation in US infants but also a major risk factor for asthma development. Growing evidence supports clinical heterogeneity within bronchiolitis.
Raita, Yoshihiko, Ramos-Tapia, Ignacio, Freishtat, Robert J, Gern, James E, Mansbach, Jonathan M, Hasegawa, Kohei, Camargo, Carlos A, Pérez-Losada, Marcos, Hahn, Andrea, Bochkov, Yury A, Castro-Nallar, Eduardo, Zhu, Zhaozhong, Stearrett, Nathaniel, Marcos Pérez-Losada, Robert J. Freishtat, Yoshihiko Raita, Jonathan M. Mansbach, Andrea Hahn, Nathaniel Stearrett, Kohei Hasegawa, Bochkov, Yury A., Zhaozhong Zhu, Mansbach, Jonathan M., Yury A. Bochkov, Freishtat, Robert J., Gern, James E., James E. Gern, Eduardo Castro-Nallar, Camargo, Carlos A., Ignacio Ramos-Tapia, Carlos A. Camargo   +30 more
core   +1 more source

Metatranscriptomics Reveals the Functions and Enzyme Profiles of the Microbial Community in Chinese Nong-Flavor Liquor Starter

Frontiers in Microbiology, 2017
Chinese liquor is one of the world's best-known distilled spirits and is the largest spirit category by sales. The unique and traditional solid-state fermentation technology used to produce Chinese liquor has been in continuous use for several thousand ...
Yuhong Huang, Yuhong Huang, Yuhong Huang, Zhuolin Yi, Zhuolin Yi, Yanling Jin, Yanling Jin, Mengjun Huang, Mengjun Huang, Kaize He, Kaize He, Dayu Liu, Huibo Luo, Dong Zhao, Hui He, Yang Fang, Yang Fang, Hai Zhao, Hai Zhao, Hai Zhao   +19 more
doaj   +1 more source

The circulating metatranscriptome in acute myeloid leukemia patients: an RNA-seq reanalysis

Frontiers in Microbiomes
The human microbiome comprises the collection of microbiota residing on or within human tissues. It is now well-established that microbial composition impacts an individual’s health.
An Dinh Duy Nguyen, Roshan Kern, Tatiana Dombrovski, Thomas LaFramboise   +3 more
doaj   +1 more source

Metatranscriptome simulated datasets of Microbiota

, 2016
Metatranscriptome simulations of Microbiome samples.
Jeremy Cox (2872190)
core   +1 more source

Metatranscriptomic exploration of microbial functioning in clouds [PDF]

Scientific Reports, 2019
Abstract Clouds constitute the uppermost layer of the biosphere. They host diverse communities whose functioning remains obscure, although biological activity potentially participates to atmospheric chemical and physical processes.
Amato, Pierre, Besaury, Ludovic, Joly, Muriel, Penaud, Benjamin, Deguillaume, Laurent, Delort, Anne-Marie   +5 more
openaire   +3 more sources

Cotton Farming Pesticides Affect Ileal Microbiota Activity and Expression of Virulome but Not Resistome or Metabolic Pathways in a Sedentary Wild Passerine

Environmental Toxicology, EarlyView.
ABSTRACT The increased use of agrochemicals to enhance crop production has had detrimental environmental effects including implication in the sharp decline of North American farmland‐breeding birds. Here, using a combination of deep shotgun metatranscriptomics and pesticide exposure data, we sought to assess whether exposure to cotton (Gossypium spp ...
Serguei V. Drovetski, Michelle L. Hladik, Carolina F. Ferreira, Dana W. Kolpin, Gary Voelker   +4 more
wiley   +1 more source