Results 61 to 70 of about 4,884 (222)
Metatranscriptome simulated datasets of Microbiota
, 2016 Metatranscriptome simulations of Microbiome samples.
Jeremy Cox (2872190)
core +1 more source
Metatranscriptome profiling of a harmful algal bloom [PDF]
Harmful Algae, 2014 Metagenomic methods provide a powerful means to investigate complex ecological phenomena. Developed originally for study of Bacteria and Archaea, the application of these methods to eukaryotic microorganisms is yet to be fully realized. Most prior environmental molecular studies of eukaryotes have relied heavily on PCR amplification with eukaryote ...
Endymion D, Cooper +4 more
openaire +2 more sources
The effects of maternal care on the developmental transcriptome and metatranscriptome of a wild bee
, 2023 Maternal care acts as a strong environmental stimulus that can induce phenotypic plasticity in animals and may also alter their microbial communities through development.
Mariam Shamekh +3 more
core +1 more source
bacNeo: A Computational Toolkit for Identifying Bacteria‐Derived Neoantigens in Human Cancers
iMetaMed, EarlyView.We present bacterial neoantigen (bacNeo), a multi‐omics‐based computational software to classify bacterial components (BACC), type bacteria‐bound HLA alleles (BACH), and prioritize bacterial peptides as neoantigens (BACP). Bacterial neoantigen potential is quantified by score for peptide antigenicity recognition & kinetics (SPARK), enabling ...
Yunzhe Wang +5 more
wiley +1 more source
SAMSA: a comprehensive metatranscriptome analysis pipeline
BMC Bioinformatics, 2016 Abstract Background Although metatranscriptomics—the study of diverse microbial population activity based on RNA-seq data—is rapidly growing in popularity, there are limited options for biologists to analyze this type of data.
Samuel T. Westreich +3 more
openaire +4 more sources
SARS‐CoV‐2 triggered oxidative stress and abnormal energy metabolism in gut microbiota
MedComm, 2022 Specific roles of gut microbes in COVID‐19 progression are critical. However, the circumstantial mechanism remains elusive. In this study, shotgun metagenomic or metatranscriptomic sequencing was performed on fecal samples collected from 13 COVID‐19 ...
Tuoyu Zhou +17 more
doaj +1 more source
Microorganisms, 2023 Smokers (SM) have increased lung immune cell counts and inflammatory gene expression compared to electronic cigarette (EC) users and never-smokers (NS).
Peter G. Shields +12 more
doaj +1 more source
Supplementary table S2 - Annotation table - C. quitensis metatranscriptome
, 2018 Colobanthus quitensis, reference metatranscriptome annotation table, including phylum information and normalized expression (Trimmed means of M-values)
Gabriel Ballesteros (3904243)
core +1 more source
iMetaOmics, EarlyView.Paradigm shift: PCR‐free methods reveal 6–15‐fold higher arbuscular mycorrhizal (AM) fungal abundance than metabarcoding, exposing systematic underestimation across decades of research. Predictive power: AM fungal abundance serves as a community‐level trait that predicts crop yield under drought conditions.
Peilin Chen, John W. Taylor, Cheng Gao
wiley +1 more source
Microorganisms, 2023 The recent global emergence of the SARS-CoV-2 pandemic has accelerated research in several areas of science whose valuable outputs and findings can help to address future health challenges in the event of emerging infectious agents.
Michaela Hyblova +7 more
doaj +1 more source