Results 81 to 90 of about 1,783 (178)

Relative abundance of genomic contents of metabolism and their expression activities in the metagenome and metatranscriptome.

, 2020
Relative abundance of each category (A) in metabolism, (B) in carbohydrate metabolism, (C) in energy metabolism, (D) in metabolism of cofactors and vitamins, (E) in amino acid metabolism, and (F) in nucleotide metabolism.
Ho-Jin Gwak (8356641), Mina Rho (28272), Youn Wook Chung (8356638), Sungmin Moon (2471614), Ji-Hwan Ryu (1823416)   +4 more
core   +1 more source

The effects of maternal care on the developmental transcriptome and metatranscriptome of a wild bee

, 2023
Maternal care acts as a strong environmental stimulus that can induce phenotypic plasticity in animals and may also alter their microbial communities through development.
Mariam Shamekh, Jesse Huisken, Sandra M. Rehan, Katherine D. Chau   +3 more
core   +1 more source

Stage‐Dependent Metabolic Reprogramming Drives a Self‐Organizing Microbial Network During Shanxi Aged Vinegar

Food Bioengineering, Volume 5, Issue 3, Page 342-358, September 2026.
Metabolic shifts from growth to stress adaptation in Shanxi aged vinegar fermentation link flavor maturation and microbial cooperation, and Lactobacillus and Acetobacter form a self‐organizing metabolic network through division of labor. ABSTRACT Acetic acid fermentation (AAF) is a vital stage in the production of Shanxi aged vinegar (SAV), during ...
Yanfang Wu, Jing Liu, Dantong Liu, Menglei Xia, Jia Song, Yu Zheng, Min Wang   +6 more
wiley   +1 more source

Foundation Models for Microbiome Research: From Sequence Semantics to Community Dynamics and Multimodal World Models

Advanced Genetics, Volume 7, Issue 3, September 2026.
Microbiome foundation models are framed as a multiscale route from sequence semantics to community ecology, multimodal alignment and future world models. By learning transferable representations across cohorts, habitats and perturbations, this roadmap highlights how microbiome AI can move beyond association‐driven analysis toward interpretable ...
Haohong Zhang, Zixin Kang, Kang Ning
wiley   +1 more source

DYEatom Metatranscriptome metadata from RV/Point Sur cruise PS1312 in the Monterey Bay area, June-July 2013

, 2019
Dataset: DYEatom: Metatranscriptome accessions and assembled contigsMetadata for assembled contigs and ORFS from metatranscriptome analysis from CTD casts in the Monterey Bay area on RV/Point Sur cruise PS1312, June-July 2013. Assembled contigs files are
Thamatrakoln, Kimberlee, Allen, Andrew E
core   +1 more source

Does nutrient scarcity select for Synechococcus clade III in the Mediterranean Sea?

Limnology and Oceanography Letters, Volume 11, Issue 5, September 2026.
Abstract Synechococcus inhabit both nutrient‐rich estuaries and oligotrophic waters, yet exhibit distinct niche segregation across phylogenetic clades. Previous studies indicated clade III predominated in the ultraoligotrophic Mediterranean Sea. However, the mechanisms underlying clade III's dominance over other clades in ultraoligotrophic waters ...
Xiaodong Zhang, Shunyan Cheung, Hoi Yau Chan, Sangwook Scott Lee, Ioulia Santi, Paraskevi Pitta, Jiawei Chen, Hongbin Liu   +7 more
wiley   +1 more source

Virome Analysis Deciphers the First Virus Occurrence in Melothria scabra, Revealing Two Potyviruses, Including a Highly Divergent Zucchini Yellow Mmosaic Virus Isolate [PDF]

The Plant Pathology Journal
Melothria scabra, an annual vine plant belonging to the family Cucurbitaceae, is usually found as a weed in agricultural ecosystems, making it a potential reservoir for crop viruses. Nonetheless, no plant virus has been documented to infect M.
Li-Juan Zhu, Jianhong Xing, Jingke Li, Weifan Lin, Yubin Chi, Jun Su, Juncheng Zhang, Zhongtian Xu   +7 more
doaj   +1 more source

Diversity of the Microbiomes in the Larval and Adult Stages of the European Cherry Fruit Fly (Rhagoletis cerasi) and Identification of Potential Biocontrol Candidate Taxa

Entomologia Experimentalis et Applicata, Volume 174, Issue 9, Page 999-1010, September 2026.
First comprehensive characterization of the R. cerasi microbiome is reported. Stage‐specific variations in microbial composition are documented. Multiple bacterial entomopathogen taxa are identified as potential biocontrol candidates for R. cerasi.
Mahdi N. Al‐Shammaa, Saber Delpasand Khabbazi, Remziye Nalcacioglu, Ismail Demir, Durdane Yanar, Zihni Demirbag   +5 more
wiley   +1 more source

Additional file 3: Table S2. of Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation [PDF]

, 2016
KEGG genes from metagenome (DNA) and metatranscriptome (RNA) data commonly identified in sparse partial least squares analysis (sPLS) and Wilcoxon rank sum test (WRS) correlated to methane yield/significantly differentially abundant between high and low ...
Sandra Kittelmann (164632), Janine Kamke (518130), Shi, Weibing, Attwood, Graeme T, Yang Li (7082), Weibing Shi (104400), Tavendale, Michael, Priya Soni (3508850), Graeme Attwood (3401918), Soni, Priya, Michael Tavendale (3508853), Ganesh, Siva, Edward Rubin (266991), Janssen, Peter H, Siva Ganesh (607045), Froula, Jeff, Rubin, Edward M, Jeff Froula (1783138), Li, Yang, Peter Janssen (284384), Kamke, Janine, Kittelmann, Sandra   +21 more
core   +1 more source

Wekemo Bioincloud 2026: An AI‐enabled platform for standardized multi‐omics data analyses

iMeta, Volume 5, Issue 4, August 2026.
An AI‐powered multi‐omics cloud platform integrating 41 standardized workflows, 126 visualization tools, and full‐lifecycle research intelligence to enable accessible, reproducible, and end‐to‐end integrative multi‐omics analysis. Abstract The rapid expansion of multi‐omics data has created an increasing demand for accessible and reproducible platforms
Yunyun Gao, Guoxing Zhang, Chengrui Wang, Hao Xu, Zhanhui Yu, Shunyao Jiang, Yong‐Xin Liu   +6 more
wiley   +1 more source