Results 101 to 110 of about 1,783 (178)

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information

mBio, 2019
Pulmonary exacerbations are the leading cause of death in cystic fibrosis (CF) patients. To track microbial dynamics during acute exacerbations, a CF rapid response (CFRR) strategy was developed.
Ana Georgina Cobián Güemes, Yan Wei Lim, Robert A. Quinn, Douglas J. Conrad, Sean Benler, Heather Maughan, Rob Edwards, Thomas Brettin, Vito Adrian Cantú, Daniel Cuevas, Rohaum Hamidi, Pieter Dorrestein, Forest Rohwer   +12 more
doaj   +1 more source

Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants

, 2018
Hassa J, Maus I, Off S, et al. Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. Applied Microbiology and Biotechnology.
Klocke, Michael, Off, Sandra, Schlüter, Andreas ; https://orcid.org/, Scherer, Paul, Maus, Irena, Hassa, Julia ; https://orcid.org/, Pühler, Alfred ; https://orcid.org/, Michael Klocke, Julia Hassa, Andreas Schlüter, Paul Scherer, Alfred Pühler, Irena Maus, Sandra Off, Pühler, Alfred, Schlüter, Andreas, Hassa, Julia   +16 more
core   +1 more source

Investigating GERMs: how genotype, environment, and rhizosphere microbiome interactions underlie heat response in maize and sorghum

New Phytologist, Volume 251, Issue 4, Page 2152-2167, August 2026.
Three genotypes – a heat‐resistant maize (Zea mays), a heat‐susceptible maize, and a sorghum (Sorghum bicolor) variety – were grown to the V4 stage in growth chambers under optimal conditions or subjected to heat stress. Plants were grown in soil containing a complex microbial community, or in the same soil with a depleted microbiome.
Nate Korth, Isabella Borrero, Katelyn Rumley, Alex L. Woodley, Mallory J. Choudoir, Joseph L. Gage   +5 more
wiley   +1 more source

Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds

MicrobiologyOpen, 2020
Microbes active in extreme cold are not as well explored as those of other extreme environments. Studies have revealed a substantial microbial diversity and identified cold‐specific microbiome molecular functions.
Chengsheng Zhu, Maximilian Miller, Nicholas Lusskin, Benoît Bergk Pinto, Lorrie Maccario, Max Häggblom, Timothy Vogel, Catherine Larose, Yana Bromberg   +8 more
doaj   +1 more source

Statistic results of metagenome and metatranscriptome sequences from sites B and E in Qinghai Lake.

, 2014
aOpen reading frame.b% of reads with an open reading frame that were annotated by function and taxonomy.base pairs (bp).Statistic results of metagenome and metatranscriptome sequences from sites B and E in Qinghai Lake.
Hongchen Jiang (105371), Geng Wu (105382), Stephen Quake (33716), Christian Edwardson (653663), Qiuyuan Huang (105378), Brandon R. Briggs (105373), Iwijn De Vlaminck (144723), Hailiang Dong (105368)   +7 more
core   +1 more source

Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015

, 2020
Dataset: Microbial eukaryotic focused metatranscriptome dataSeawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in ...
Caron, David, Hu, Sarah K
core   +1 more source

MicroFisher_DBs

, 2022
The databases for MicroFisher, the fungal classification pipeline for Metatranscriptome and Metagenome.
Haihua Wang (12477636)
core   +1 more source

MOESM1 of Occurrence and expression of genes encoding methyl-compound production in rumen bacteria

, 2019
Additional file 1: Table S1. A. CutC genes in the combined metagenome/metatranscriptome and Hungate1000 datasets. B. Metagenome abundance of PME genes identified from the combined metagenome/metatranscriptome and Hungate1000 datasets.
Roderick Mackie (3501038), Janine Kamke (518130), Satoshi Koike (253439), Gregory Cook (777541), Sergio Morales (3488396), Chris Greening (603810), Sinead Leahy (3133518), Priya Soni (3508850), Rekha Seshadri (56912), William Kelly (3401927), Graeme Attwood (3401918)   +10 more
core   +1 more source

Microcystis bloom control using hydrogen peroxide and floating sodium percarbonate algaecide Lake Guard Oxy in Florida

Applied and Environmental Microbiology
Harmful algal blooms (HABs) pose a critical threat to aquatic ecosystems, human health, and economies globally, necessitating effective mitigation strategies.
Taylor L. Hancock, Elizabeth K. Dahedl, Hidetoshi Urakawa   +2 more
doaj   +1 more source

Transcriptionally Active Lung Microbiome and Its Association with Bacterial Biomass and Host Inflammatory Status

mSystems, 2018
Alteration of the lung microbiome has been observed in several respiratory tract diseases. However, most previous studies were based on 16S ribosomal RNA and shotgun metagenome sequencing; the viability and functional activity of the microbiome, as well ...
Lili Ren, Rongbao Zhang, Jian Rao, Yan Xiao, Zhao Zhang, Bin Yang, Depan Cao, Hui Zhong, Pu Ning, Ying Shang, Mingkun Li, Zhancheng Gao, Jianwei Wang   +12 more
doaj   +1 more source