Results 121 to 130 of about 1,783 (178)

Additional file 6 of Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children

, 2020
Additional file 6: Figure S4.
Shirley Bikel (8548002), Henrik Nielsen (208947), Fernanda Cornejo-Granados (8547996), Alejandra Valdez-Lara (8547999), Samuel Canizales-Quinteros (119661), Adrián Ochoa-Leyva (444236), Alfredo Mendoza-Vargas (258241), Luigui Gallardo-Becerra (8547993), Rodrigo García-López (7870982), Blanca López-Contreras (443551)   +9 more
core   +1 more source

Additional file 3: of Metagenomic and metatranscriptomic analysis of human prostate microbiota from patients with prostate cancer

, 2019
Comparison of bacterial composition between metagenome and metatranscriptome. (A) Venn diagram of bacterial genera identified by metagenome, metatranscriptome and the study by Yow et al. [13].
Elai Davicioni (425648), Ye Feng (196094), Varune Ramnarine (6374825), Colin Collins (44574), Stanislav Volik (44573), Vanessa Hayes (5305292), Robert Bell (5218055), Shancheng Ren (121352)   +7 more
core   +1 more source

Additional file 3 of Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics

, 2020
Additional file 3.
Alfred Pühler (39776), Alexander Sczyrba (16021), Christian Henke (361552), Michael Klocke (1624867), Daniel Wibberg (839038), Irena Maus (3490166), Michael Beckstette (683885), Jaqueline Derenkó (8522706), Andreas Schlüter (201339), Antje Rademacher (8522712), Katharina Willenbücher (8522709), Carsten Jost (6405236), Madis Rumming (539007), Yvonne Stolze (3490184), Jochen Blom (104512)   +14 more
core   +1 more source

Microbiome properties in the root nodules of Prosopis cineraria, a leguminous desert tree

Microbiology Spectrum
We conducted a comprehensive analysis of the total microbiome and transcriptionally active microbiome communities in the roots and root nodules of Prosopis cineraria, an important leguminous tree in arid regions of many Asian countries.
Rashid Ali, Srinivasa R. Chaluvadi, Xuewen Wang, Khaled M. Hazzouri, Naganeeswaran Sudalaimuthuasari, Mohammed Rafi, Mariam Al-Nuaimi, Shina Sasi, Eric Antepenko, Jeffrey L. Bennetzen, Khaled M. A. Amiri   +10 more
doaj   +1 more source

Additional file 7 of Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children

, 2020
Additional file 7: Table S3.
Shirley Bikel (8548002), Henrik Nielsen (208947), Fernanda Cornejo-Granados (8547996), Alejandra Valdez-Lara (8547999), Samuel Canizales-Quinteros (119661), Adrián Ochoa-Leyva (444236), Alfredo Mendoza-Vargas (258241), Luigui Gallardo-Becerra (8547993), Rodrigo García-López (7870982), Blanca López-Contreras (443551)   +9 more
core   +1 more source

Functional dynamics reveal the response of the crabapple (Malus sp.) phyllosphere microbiome to Gymnosporangium yamadae infection

mSystems
The phyllosphere microbiome plays a vital role in plant defense against airborne pathogens. In this study, we investigated microbial dynamics of crabapple (Malus ‘Kelsey’) phyllosphere across six stages of Gymnosporangium yamadae infection using ...
Qianran Xu, Yonghua Zhang, Siqi Tao
doaj   +1 more source

Microbiota and Metatranscriptome Changes Accompanying the Onset of Gingivitis

, 2018
Over half of adults experience gingivitis, a mild yet treatable form of periodontal disease caused by the overgrowth of oral microbes. Left untreated, gingivitis can progress to a more severe and irreversible disease, most commonly chronic periodontitis.
Marvin Whiteley, Julie Drury, Jolene Zirnheld, Jacqueline A. Singleton, Brock Colleti, Richard J. Lamont, Debra Wallace, David A. Scott, Andrew D. Ellington, Diane E. Renaud, Emily M. Nowicki, Raghav Shroff   +11 more
core   +1 more source

Dietary modulation of the rumen microbiome drives the expression of metabolic and methanogenic pathways in Bos indicus

mSphere
Diet influences ruminal methane emissions by modulating the composition and activity of the rumen microbiome. However, how diet shapes the functional capacity of the rumen microbiome in Nelore cattle (Bos indicus), a key tropical beef breed, remains ...
Juliana Virginio da Silva, Liliane Costa Conteville, Jennifer Jessica Bruscadin, Tainã Figueiredo Cardoso, Thanny Porto, Priscila Silva Neubern de Oliveira, Adhemar Zerlotini, Sergio Raposo de Medeiros, Gerson Barreto Mourão, Luiz Lehmann Coutinho, Julio Cesar Pascale Palhares, Alexandre Berndt, Le Luo Guan, Bruno Gabriel Nascimento Andrade, Luciana Correia de Almeida Regitano   +14 more
doaj   +1 more source

An overview for protein identification using metaproteomic data, with metagenomic (MG) sequencing and metatranscriptomic (MT) data obtained from matched samples.

, 2016
We report two novel graph traversal algorithms (Graph2Pep and Graph2Pro, highlighted in red in the figure) to extract peptides and proteins from the de Bruijn graph representation of metagenome/metatranscriptome assemblies, respectively. We note the same
Haixu Tang (16054), Sujun Li (2234731), Yuzhen Ye (4283)   +2 more
core   +1 more source

Characterization of the intrahepatic microbiome in patients with HBV-related end-stage liver disease

Virulence
Background Dysregulated microbiota is a hallmark of end-stage liver disease (ESLD). This study aimed to elucidate the intrahepatic microbiome in hepatitis B virus (HBV)-related ESLD.Methods We collected liver tissue samples from patients undergoing liver
Jiyang Chen, Tianzhu Liang, Xianbin Xu, Xia Yu, Zhiwei Li, Xin Zheng, Yiwei Liu, Sisi Yang, Zelu Meng, Yani Zhou, Chanyuan Ye, Huilan Tu, Guoqiang Cao, Hai Chen, Leiming Chen, Biao Li, Ying Nie, Siqi Sun, Yining Zhang, Yingfeng Lu, Xiaoli Zhang, Guodong Yu, Yan Lv, Hongyu Jia, Ziqing Deng, Na Pei, Yu Shi, Yida Yang   +27 more
doaj   +1 more source