Results 121 to 130 of about 4,884 (222)

Data_Sheet_2_Direct Metatranscriptome RNA-seq and Multiplex RT-PCR Amplicon Sequencing on Nanopore MinION – Promising Strategies for Multiplex Identification of Viable Pathogens in Food.docx

, 2020
Viable pathogenic bacteria are major biohazards that pose a significant threat to food safety. Despite the recent developments in detection platforms, multiplex identification of viable pathogens in food remains a major challenge.
Luo Sun (3005187), Xiaobo Liu (296632), Alyssa Cousineau (8691456), Jack Lepine (8691462), Shaohua Li (334567), Yaguang Luo (1653670), Mingqun Xu (8691465), Manyun Yang (8691453), Tingting Gu (134428), Hayden Dillow (8691459), Boce Zhang (1597636), Daniel Sun (2643193)   +11 more
core   +1 more source

Additional file 10: Table S5. of Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

, 2016
Read mapping statistics of metagenome and metatranscriptome data for lcdA genes.
Sandra Kittelmann (164632), Michael Tavendale (3508853), Edward Rubin (266991), Janine Kamke (518130), Siva Ganesh (607045), Yang Li (7082), Weibing Shi (104400), Jeff Froula (1783138), Priya Soni (3508850), Peter Janssen (284384), Graeme Attwood (3401918)   +10 more
core   +1 more source

Metatranscriptomics of the human gut microbiome [PDF]

Genome Biology, 2011
Our ‘other’ genome is the collective genetic information in all of the microorganisms that are living on and within us. Collectively known as the microbiome, these microbial cells outnumber human cells in the body by more than 10 to 1, and the genes carried by these organisms outnumber the genes in the human genome by more than 100 to 1.
openaire   +1 more source

Worlds Apart – Transcriptome Profiles of Key Oral Microbes in the Periodontal Pocket Compared to Single Laboratory Culture Reflect Synergistic Interactions

Frontiers in Microbiology, 2018
Periodontitis is a worldwide prevalent oral disease which results from dysbiosis of the periodontal microbiome. Some of the most active microbial players, e.g., Porphyromonas gingivalis, Treponema denticola, and Fusobacterium nucleatum, have extensively ...
Zhi-Luo Deng, Helena Sztajer, Michael Jarek, Sabin Bhuju, Irene Wagner-Döbler   +4 more
doaj   +1 more source

Metatranscriptome Analysis of Phytoplankton Communities in Response to Hurricane Harvey [PDF]

, 2023
Hurricanes influence microplankton communities through many processes including mixing of the water column, changing community structure, and changing nutrient availability.
Maness, Emily K.
core  

Statistic results of metagenome and metatranscriptome sequences from sites B and E in Qinghai Lake.

, 2014
aOpen reading frame.b% of reads with an open reading frame that were annotated by function and taxonomy.base pairs (bp).Statistic results of metagenome and metatranscriptome sequences from sites B and E in Qinghai Lake.
Hongchen Jiang (105371), Geng Wu (105382), Stephen Quake (33716), Christian Edwardson (653663), Qiuyuan Huang (105378), Brandon R. Briggs (105373), Iwijn De Vlaminck (144723), Hailiang Dong (105368)   +7 more
core   +1 more source

Additional file 6: Figure S2. of Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

, 2016
Functions involved in synthesis of aromatic amino acid precursors in relation to methane yield. Green boxes indicate that related genes were chosen as predictors of methane yield with negative correlation based on sPLS analysis of metatranscriptome data.
Sandra Kittelmann (164632), Michael Tavendale (3508853), Edward Rubin (266991), Janine Kamke (518130), Siva Ganesh (607045), Yang Li (7082), Weibing Shi (104400), Jeff Froula (1783138), Priya Soni (3508850), Peter Janssen (284384), Graeme Attwood (3401918)   +10 more
core   +1 more source

Development of computational methods for the analysis of metagenome and metatranscriptome data

, 2012
Zakrzewski M. Development of computational methods for the analysis of metagenome and metatranscriptome data.
Zakrzewski, Martha
core  

Additional file 1 of Metatranscriptome analysis of symptomatic bitter apple plants revealed mixed viral infections with a putative novel polerovirus

Supplementary Material 1: Metatranscriptome analysis of symptomatic bitter apple plants revealed mixed viral infections with a putative novel ...
Hossein Massumi (17975407), Mehdi Mansouri (7539101), Jahangir Heydarnejad (238693), Akbar Hosseinipour (17975413), Samin H. Farhangi (17975410), Shahrbanou Ghorani (17975404)   +5 more
core   +1 more source

Microbiome properties in the root nodules of Prosopis cineraria, a leguminous desert tree

Microbiology Spectrum
We conducted a comprehensive analysis of the total microbiome and transcriptionally active microbiome communities in the roots and root nodules of Prosopis cineraria, an important leguminous tree in arid regions of many Asian countries.
Rashid Ali, Srinivasa R. Chaluvadi, Xuewen Wang, Khaled M. Hazzouri, Naganeeswaran Sudalaimuthuasari, Mohammed Rafi, Mariam Al-Nuaimi, Shina Sasi, Eric Antepenko, Jeffrey L. Bennetzen, Khaled M. A. Amiri   +10 more
doaj   +1 more source