Results 131 to 140 of about 1,783 (178)

Feedback on a c omparative metatranscriptomic analysis

, 2019
The progress of next generation sequencing favors the development of more comprehensive ecosystem studies thanks to metatranscriptomic approaches. These latter can indeed provide access to functional information at a good analysis depth. Through a study of anaerobic digesters treating anionic surfactant contaminated wastewater [1] (namely the linear ...
Midoux, Cedric, Delforno, Tiago P., Macedo, Thais Z., Lacerda, Gileno V., Rué, Olivier, Mariadassou, Mahendra, Varesche, Maria B.A., Bouchez, Théodore, Bize, Ariane, Oliveira, Valéria M., Loux, Valentin   +10 more
openaire   +2 more sources

Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success

mSystems
The continental shelf of the Western Antarctic Peninsula (WAP) is a highly variable system characterized by strong cross-shelf gradients, rapid regional change, and large blooms of phytoplankton, notably diatoms. Rapid environmental changes coincide with
Carly M. Moreno, Margaret Bernish, Meredith G. Meyer, Zuchuan Li, Nicole Waite, Natalie R. Cohen, Oscar Schofield, Adrian Marchetti   +7 more
doaj   +1 more source

Final metatranscriptome datasets

Final metatranscriptome ...
openaire   +1 more source

Insights into Octopus maya cathepsins from metatranscriptome and genome: structure evolutionary relationships and functional role prediction in digestive processes

Biology Open
Daisy Pineda-Suazo, Francisco Guillén-Chable, Wendy Itzel Escobedo-Hinojosa, Clara E. Galindo-Sánchez, Carlos Rosas   +4 more
doaj   +1 more source

Assessment of metatranscriptomic expression profiles

Assessment of metatranscriptomic expression profiles of secondary metabolic pathways in at least 3 deep-sea ...
openaire   +1 more source

Methodologies for Probing the Metatranscriptome of Grassland Soil [PDF]

Journal of Microbiological Methods, 2016
Metatranscriptomics provides an opportunity to identify active microbes and expressed genes in complex soil communities in response to particular conditions.
Aaron Garoutte, Erick Cardenas, Adina Howe   +2 more
exaly   +6 more sources

Identifying Biodegradation Pathways of Cetrimonium Bromide (CTAB) Using Metagenome, Metatranscriptome, and Metabolome Tri-Omics Integration

Water Research, 2023
International audienceTraditional research on biodegradation of emerging organic pollutants involves slow and labor-intensive experimentation. Currently, fast-developing metagenome, metatranscriptome, and metabolome technologies promise to expedite ...
YenJung Sean Lai, Yi-Hao Luo, Zehra Esra Ilhan   +2 more
exaly   +2 more sources

Metatranscriptome Analysis of Lactic Acid Bacteria During Kimchi Fermentation With Genome-Probing Microarrays

International Journal of Food Microbiology, 2009
We constructed genome probing microarrays (GPM) that are specific to 39 lactic acid bacteria (LAB) in an effort to monitor microbial diversity and biological activity during the fermentation of kimchi, a traditional Korean vegetable product known to ...
Jin-woo Bae, Young-Do Nam, Kyoung-Ho Kim
exaly   +2 more sources

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Deciphering Metatranscriptomic Data

2014
Metatranscriptomic data contributes another piece of the puzzle to understanding the phylogenetic structure and function of a community of organisms. High-quality total RNA is a bountiful mixture of ribosomal, transfer, messenger and other noncoding RNAs, where each family of RNA is vital to answering questions concerning the hidden microbial world ...
Kopylova, Evguenia, Noé, Laurent, da Silva, Corinne, Berthelot, Jean-Frédéric, Alberti, Adriana, Aury, Jean-Marc, Touzet, Helene   +6 more
openaire   +4 more sources

Quantitative Microbial Metatranscriptomics

2014
The direct retrieval and sequencing of environmental RNA is emerging as a powerful technique to elucidate the in situ activities of microbial communities. Here we provide a metatranscriptomic protocol describing environmental sample collection, rRNA depletion, mRNA amplification, cDNA synthesis, and bioinformatic analysis.
Scott, Gifford, Brandon, Satinsky, Mary Ann, Moran   +2 more
openaire   +2 more sources