Results 131 to 140 of about 4,884 (222)

Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing

, 2014
Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst
Antje Wichels, Kostadinov, I., Wichels, A., Ivaylo Kostadinov, Glöckner, Frank Oliver, Kopf, A., Kopf, Anna, Christian Quast, Wichels, Antje, Quast, Christian, Anna Kopf, Glöckner, F., Quast, C., Kostadinov, Ivaylo, Frank Oliver Glöckner   +14 more
core   +1 more source

Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success

mSystems
The continental shelf of the Western Antarctic Peninsula (WAP) is a highly variable system characterized by strong cross-shelf gradients, rapid regional change, and large blooms of phytoplankton, notably diatoms. Rapid environmental changes coincide with
Carly M. Moreno, Margaret Bernish, Meredith G. Meyer, Zuchuan Li, Nicole Waite, Natalie R. Cohen, Oscar Schofield, Adrian Marchetti   +7 more
doaj   +1 more source

Soil contamination alters the willow root and rhizosphere metatranscriptome and the root\u2013rhizosphere interactome

, 2018
Phytoremediation using willows is thought to be a sustainable alternative to traditional remediation techniques involving excavation, transport, and landfilling.
Joly, Simon, Julien Tremblay, Pitre, Frederic E., Greer, Charles W., Greer, Charles, Tremblay, Julien, Frederic E. Pitre, Labrecque, Michel, Simon Joly, Michel Labrecque, Christine Maynard, Marc St-Arnaud, Charles W. Greer, St-Arnaud, Marc, Etienne Yergeau, Maynard, Christine, Pitre, Frederic, Yergeau, Etienne   +17 more
core   +1 more source

SAMSA2: A standalone metatranscriptome analysis pipeline

, 2017
BackgroundComplex microbial communities are an area of rapid growth in biology. Metatranscriptomics allows one to investigate the gene activity in an environmental sample via high-throughput sequencing.
Samuel T Westreich, Danielle G Lemay, David A Mills, Ian Korf, Michelle L Treiber   +4 more
core   +1 more source

Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome

, 2010
The lactic acid bacterial (LAB) community dynamics of two wheat and two spelt sourdough fermentations that were daily back-slopped were monitored during a period of 10 days by hybridizing time-related RNA samples, representing the metatranscriptome, to ...
Joke Allemeersch, Weckx, Stefan, Allemeersch, Joke, Vandamme, Peter, Luc De Vuyst, Huys, Geert, Roel Van der Meulen, Van Hummelen, Paul, Geert Huys, Paul Van Hummelen, Van der Meulen, Roel, Peter Vandamme, Stefan Weckx, De Vuyst, Luc   +13 more
core   +1 more source

HyDRA: A pipeline for integrating long- and short-read RNAseq data for custom transcriptome assembly. [PDF]

iScience
Almeida I, Lu X, Edwards SL, French JD, Bitar M.   +4 more
europepmc   +1 more source

The metatranscriptomic response of the wheat rhizosphere to drought varies with growth stages. [PDF]

ISME Commun
Pande PM, Tremblay J, St-Arnaud M, Yergeau E.   +3 more
europepmc   +1 more source

Depth-resolved partitioning of phytoplankton and bacterial communities in a seasonally stratified large lake. [PDF]

Microbiol Resour Announc
Brown KM, Rozmarynowycz MJ, Glavina Del Rio T, Rudstam LG, McKay RM.   +4 more
europepmc   +1 more source

Bipolar investigation of near-surface glacial ice reveals an active microbial ecosystem driven by photosynthesis and chemolithoautotrophy. [PDF]

ISME Commun
O'Connor BRW, Allen D, Quinn M, Kozey M, Léveillé RJ, Whyte LG.   +5 more
europepmc   +1 more source

Altered Stereostructures of the DNA-Binding Domains of Variant Mating Proteins of Ophiocordyceps sinensis and the Wild Insect-Fungal Complex. [PDF]

Biology (Basel)
Li XZ, Li YL, Liu W, Zhu JS.
europepmc   +1 more source