Results 111 to 120 of about 1,783 (178)

Multiomics comparative analysis of feces AMRGs of Duroc pigs and Tibetan and the effect of fecal microbiota transplantation on AMRGs upon antibiotic exposure

Microbiology Spectrum
Fecal matter is recognized as both a reservoir and a transmission source for various antimicrobial resistance genes (AMRGs). However, the transcriptional activity of AMRGs in swine feces is not well understood. In addition, the effect of fecal microbiota
Tao Wang, Yuheng Luo, Xiangfeng Kong, Ling Fang, Liping Zhu, Bing Yu, Ping Zheng, Zhiqing Huang, Xiangbing Mao, Yu Jie, Junqiu Luo, Hui Yan, Jun He   +12 more
doaj   +1 more source

Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome

, 2010
The lactic acid bacterial (LAB) community dynamics of two wheat and two spelt sourdough fermentations that were daily back-slopped were monitored during a period of 10 days by hybridizing time-related RNA samples, representing the metatranscriptome, to ...
Joke Allemeersch, Weckx, Stefan, Allemeersch, Joke, Vandamme, Peter, Luc De Vuyst, Huys, Geert, Roel Van der Meulen, Van Hummelen, Paul, Geert Huys, Paul Van Hummelen, Van der Meulen, Roel, Peter Vandamme, Stefan Weckx, De Vuyst, Luc   +13 more
core   +1 more source

DNA and cDNA counts for all samples

, 2020
All counts and normalized counts for the metagenome and metatranscriptome.
LesleyAnn Giddings (8462607)
core   +1 more source

Additional file 1 of Metatranscriptome analysis of symptomatic bitter apple plants revealed mixed viral infections with a putative novel polerovirus

Supplementary Material 1: Metatranscriptome analysis of symptomatic bitter apple plants revealed mixed viral infections with a putative novel ...
Hossein Massumi (17975407), Mehdi Mansouri (7539101), Jahangir Heydarnejad (238693), Akbar Hosseinipour (17975413), Samin H. Farhangi (17975410), Shahrbanou Ghorani (17975404)   +5 more
core   +1 more source

Additional file 6: Figure S2. of Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

, 2016
Functions involved in synthesis of aromatic amino acid precursors in relation to methane yield. Green boxes indicate that related genes were chosen as predictors of methane yield with negative correlation based on sPLS analysis of metatranscriptome data.
Sandra Kittelmann (164632), Michael Tavendale (3508853), Edward Rubin (266991), Janine Kamke (518130), Siva Ganesh (607045), Yang Li (7082), Weibing Shi (104400), Jeff Froula (1783138), Priya Soni (3508850), Peter Janssen (284384), Graeme Attwood (3401918)   +10 more
core   +1 more source

Gastric Microbiota in Patients with Dyspepsia: Metatranscriptomic Analysis

Российский журнал гастроэнтерологии, гепатологии, колопроктологии
Aim: to assess the composition of the microbiota of the mucous membrane of the body and the antrum of the stomach.Materials and methods. Sixty patients with dyspeptic symptoms were included into the study.
Е. А. Kupriyanova, М. I. Markelova, Е. А. Ziyatdinova, D. D. Safina, A. G. Safin, I. М. Alieva, R. К. Zalyalov, R. А. Abdulkhakov, Т. V. Grigoryeva, S. R. Abdulkhakov   +9 more
doaj   +1 more source

Arbuscular mycorrhizal fungal community abundance, functions, and symbiotic interactions revealed by root metatranscriptomes

iMetaOmics
Arbuscular mycorrhizal (AM) fungal communities are often profiled by metabarcoding, but this approach can bias abundance estimates and provide limited insight into community function and interactions with the host.
Peilin Chen, John W. Taylor, Cheng Gao
doaj   +1 more source

Optimising RNA extraction for paddy bulk soil samples for metatranscriptome sequencing [PDF]

Objective: Extraction of high-quality RNA is crucial for understanding the molecular dynamics of microbiomes in the growth and development of paddy plants.
Vadamalai, Ganesan, Hata, Erneeza Mohd, Parimannan, Sivachandran, Yee Fan, Tan, Petersen, Bent, Mohd Hata, Erneeza, Kumarasan, Yukgehnaish, Rajandas, Heera, Tan, Yee Fan, Sivaprakasam, Sumitra, Sicheritz-Pontén, Thomas   +10 more
core   +1 more source

The Oral Mouse Microbiome Promotes Tumorigenesis in Oral Squamous Cell Carcinoma

mSystems, 2019
Oral squamous cell carcinoma (OSCC) is the most common malignancy of the head and neck worldwide. Dysbiosis of the microbiome has increasingly been linked to the development of different kinds of cancer.
Philip Stashenko, Susan Yost, Yoonhee Choi, Theodora Danciu, Tsute Chen, Subbiah Yoganathan, Christine Kressirer, Montserrat Ruiz-Tourrella, Bikul Das, Alexis Kokaras, Jorge Frias-Lopez   +10 more
doaj   +1 more source

Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing

, 2014
Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst
Antje Wichels, Kostadinov, I., Wichels, A., Ivaylo Kostadinov, Glöckner, Frank Oliver, Kopf, A., Kopf, Anna, Christian Quast, Wichels, Antje, Quast, Christian, Anna Kopf, Glöckner, F., Quast, C., Kostadinov, Ivaylo, Frank Oliver Glöckner   +14 more
core   +1 more source