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Advances and Challenges in Metatranscriptomic Analysis
2021New-era genomic tools have proved themselves a big boon in showing a path to get an insight to microbial evolution, taxonomic profiling, active members of a community and the genes involved in many metabolic pathways. Shotgun metagenomics helps in random sequencing of genome of the studied microbiome; however, it does not show the exact number of ...
Anushka Singh +2 more
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A Hitchhiker’s Guide to Metatranscriptomics
2016Recent technological development in high throughput DNA sequencing has opened many venues for biological systems analysis, where the data generation is no longer the bottleneck but its analysis. The sequencing technological advancements are being used in the study of a large and previously unknown microbe world; this unknown world has revealed itself ...
Mariana Peimbert, Luis David Alcaraz
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Enhancing Arbovirus Surveillance with Metatranscriptomics
2021Submitted in total fulfilment of the requirements for the degree of Doctor of Philosophy to the School of Applied Systems Biology, College of Science, Health and Engineering, La Trobe University, Victoria.This thesis was a recipient of the Nancy Millis Award for theses of exceptional merit.
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Metatranscriptomics catches gut microbes in the act
Cell Host & MicrobeIn this issue of Cell Host & Microbe, Flores Ramos et al.1 employ metatranscriptomics to uncover diurnal microbial functional shifts in the gut microbiome driven by time-restricted feeding. Their work highlights the value of metatranscriptomics over metagenomics in capturing real-time microbial activity and guiding therapeutic bacterial engineering.
Kailin, Liu, Yuhao, Wang
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Generation and Analysis of Microbial Metatranscriptomes
2015Analysis of the collective RNA pool from a microbial community - the metatranscriptome - yields valuable information on microbial gene expression patterns and biogeochemical processes in natural environments. Molecular and analytical tools for analyzing metatranscriptomes using high-throughput sequencing have advanced rapidly in recent years and ...
Neha Sarode +4 more
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Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data
Briefings in Bioinformatics, 2023Azcarate-Peril M Andrea, Divaris Kimon
exaly