Results 1 to 10 of about 487,107 (281)

The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities

mSystems, 2020
High-throughput sequencing has allowed unprecedented insight into the composition and function of complex microbial communities. With metatranscriptomics, it is possible to interrogate the transcriptomes of multiple organisms simultaneously to get an ...
Thomas Yssing Michaelsen, Jakob Brandt, Caitlin Margaret Singleton, Rasmus Hansen Kirkegaard, Johanna Wiesinger, Nicola Segata, Mads Albertsen   +6 more
doaj   +3 more sources

Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing

Nature Communications, 2021
Microbes play key roles in wastewater treatment. Here, Singleton et al. use long-read and short-read sequencing to recover 1083 high-quality metagenome-assembled genomes from 23 wastewater treatment plants, and combine this information with amplicon data,
Caitlin M. Singleton, Francesca Petriglieri, Jannie M. Kristensen, Rasmus H. Kirkegaard, Thomas Y. Michaelsen, Martin H. Andersen, Zivile Kondrotaite, Søren M. Karst, Morten S. Dueholm, Per H. Nielsen, Mads Albertsen   +10 more
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Synthetic microbial communities [PDF]

Current Opinion in Microbiology, 2014
While natural microbial communities are composed of a mix of microbes with often unknown functions, the construction of synthetic microbial communities allows for the generation of defined systems with reduced complexity. Used in a top-down approach, synthetic communities serve as model systems to ask questions about the performance and stability of ...
Großkopf, Tobias, Soyer, Orkun S
openaire   +2 more sources

MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants

Nature Communications, 2022
Microbial communities are responsible for biological wastewater treatment. Here, Dueholm et al. generate more than 5 million high-quality, full-length 16S rRNA gene sequences from wastewater treatment plants across the world to construct a database with ...
Morten Kam Dahl Dueholm, Marta Nierychlo, Kasper Skytte Andersen, Vibeke Rudkjøbing, Simon Knutsson, MiDAS Global Consortium, Mads Albertsen, Per Halkjær Nielsen   +7 more
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A comprehensive overview of the Chloroflexota community in wastewater treatment plants worldwide

mSystems, 2023
Filamentous Chloroflexota are abundant in activated sludge wastewater treatment plants (WWTPs) worldwide and are occasionally associated with poor solid-liquid separation or foaming, but most of the abundant lineages remain undescribed.
Francesca Petriglieri, Zivile Kondrotaite, Caitlin Singleton, Marta Nierychlo, Morten K. D. Dueholm, Per H. Nielsen   +5 more
doaj   +1 more source

Microbial Interactions within a Cheese Microbial Community [PDF]

Applied and Environmental Microbiology, 2008
ABSTRACT The interactions that occur during the ripening of smear cheeses are not well understood. Yeast-yeast interactions and yeast-bacterium interactions were investigated within a microbial community composed of three yeasts and six bacteria found in cheese. The growth dynamics of this community was precisely described during
Mounier, Jérôme, Monnet, Christophe, Vallaeys, Tatiana, Arditi, Roger, Sarthou, Anne-Sophie, Hélias, Arnaud, Irlinger, Françoise   +6 more
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Influence of biofilm growth age, media, antibiotic concentration and exposure time on Staphylococcus aureus and Pseudomonas aeruginosa biofilm removal in vitro

BMC Microbiology, 2020
Background Biofilm is known to be tolerant towards antibiotics and difficult to eradicate. Numerous studies have reported minimum biofilm eradication concentration (MBEC) values of antibiotics for many known biofilm pathogens.
Xiaofeng Chen, Trine Rolighed Thomsen, Heinz Winkler, Yijuan Xu   +3 more
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Reevaluation of the Phylogenetic Diversity and Global Distribution of the Genus “Candidatus Accumulibacter”

mSystems, 2022
“Candidatus Accumulibacter” was the first microorganism identified as a polyphosphate-accumulating organism (PAO) important for phosphorus removal from wastewater.
Francesca Petriglieri, Caitlin M. Singleton, Zivile Kondrotaite, Morten K. D. Dueholm, Elizabeth A. McDaniel, Katherine D. McMahon, Per H. Nielsen   +6 more
doaj   +1 more source

Microbial Communication Superhighways [PDF]

Cell, 2011
Exchange of information is critical for bacterial social behaviors. Now Dubey and Ben-Yehuda (2011) provide evidence for bacterial "nanotube" conduits that allow microbes to directly exchange cytoplasmic factors. Protein and DNA transfer between distantly related species raises the prospect of a new, widely distributed mechanism of bacterial ...
Schertzer, Jeffrey W., Whiteley, Marvin
openaire   +2 more sources

Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax)

mBio, 2020
High-throughput 16S rRNA gene amplicon sequencing is an essential method for studying the diversity and dynamics of microbial communities. However, this method is presently hampered by the lack of high-identity reference sequences for many environmental ...
Morten Simonsen Dueholm, Kasper Skytte Andersen, Simon Jon McIlroy, Jannie Munk Kristensen, Erika Yashiro, Søren Michael Karst, Mads Albertsen, Per Halkjær Nielsen   +7 more
doaj   +1 more source