Results 221 to 230 of about 137,737 (287)

From short to long: The impact of read length on metagenome assembly and binning

Methods in Ecology and Evolution, EarlyView.
Abstract Metagenome sequencing not only plays a pivotal role in unravelling the genetic diversity and functional potential of microbial communities but also facilitates the discovery of genome context for microbial dark matter. This study presents a comparative analysis of metagenome sequencing strategies, focusing on the impact of read length on the ...
Xi Peng, Xingsheng Yang, Danrui Wang, Bo Zhao, Kai Feng, Qing He, Shang Wang, Ye Deng   +7 more
wiley   +1 more source

Uranium contamination mediating soil and ore microbial community assembly at four mining sites, South China. [PDF]

Front Microbiol
Chen H, Sheng Y, Wang S, Chen Y, Qiao Z, Guo H, Dong H.   +6 more
europepmc   +1 more source

Effects of applying Trichoderma asperellum to rice (Oryza sativa) on phytobiome and plant responses

Annals of Applied Biology, EarlyView.
We investigated the effect of dipping at transplanting or post‐transplanting spray application on the root‐associated microbiome or leaf epiphytes via amplicon sequencing, and on plant responses via RNA‐seq. Both root dipping and foliar application with Trichoderma asperellum spore suspension only had a limited impact on the leaf epiphytes and root ...
Greg Deakin, Georgina Fagg, Tom Passey, Louisa Robinson‐Boyer, Xiangming Xu   +4 more
wiley   +1 more source

Composted PBST Biodegradable Mulch Film Residues Enhance Crop Development: Insights into Microbial Community Assembly, Network Interactions, and Soil Metabolism. [PDF]

Plants (Basel)
Li L, Liu L, Zou G, Wang X, Xu L, Yang Y, Liu J, Liu H, Liu D.   +8 more
europepmc   +1 more source

The Emerging Short Chain Fatty Acid Enriched Metabotype in Irritable Bowel Syndrome and Its Potential Clinical Relevance

Alimentary Pharmacology &Therapeutics, EarlyView.
In a cohort of IBS‐D patients recruited to the TRITON study, faecal metabolomic profiling reveals a SCFA‐enriched metabotype associated with increased pain and urgency, altered stool characteristics and accelerated intestinal transit. ABSTRACT Background Metabolomic analysis in irritable bowel syndrome (IBS) has identified metabotypes enriched in ...
T. E. Conley, A. Duncan, A. Modasia, A. C. Ford, D. M. Pritchard, F. Hildebrand, F. J. Warren, R. Spiller, C. S. Probert   +8 more
wiley   +1 more source

Geographic Distribution Pattern Determines Soil Microbial Community Assembly Process in Acanthopanax senticosus Rhizosphere Soil. [PDF]

Microorganisms
Wang M, Xing X, Zhang Y, Sui X, Zheng C.
europepmc   +1 more source

Modulation of KATP channels by diazoxide preserves mitochondrial function and barrier integrity under staurosporine‐induced epithelial stress

British Journal of Pharmacology, EarlyView.
Background and Purpose Intestinal barrier dysfunction caused by mitochondrial stress, oxidative damage and apoptosis, are hallmarks of dysbiosis‐associated gastrointestinal (GI) disorders. Staurosporine causes downstream features of dysbiosis‐induced epithelial damage.
Fatima Maqoud, Eleonora Malerba, Simona Drago, Antonella Orlando, Domenica Mallardi, Nicoletta De Lucia, Marina Antonacci, Annamaria Di Turi, Domenico Tricarico, Francesco Russo   +9 more
wiley   +1 more source

Bioremediation Potential of Rhodococcus qingshengii PM1 in Sodium Selenite-Contaminated Soil and Its Impact on Microbial Community Assembly. [PDF]

Microorganisms
Peng M, Deng G, Hu C, Hou X, Wang Z.
europepmc   +1 more source

Rethinking areas of endemism and barriers: perspectives for a causal historical biogeography and a critique of Schultz and Cracraft (2024)

Cladistics, EarlyView.
Abstract Historical biogeography faces a persistent conceptual and methodological dilemma concerning the nature of its central analytical units. Using the recent proposal by Schultz and Cracraft (Cladistics 40, 653) as a catalyst, this article critiques the argument that causal inference necessitates the replacement of areas of endemism with barriers ...
Augusto Ferrari
wiley   +1 more source

Characteristics of soil microbial community assembly patterns in fields with serious occurrence of tobacco Fusarium wilt disease. [PDF]

Front Microbiol
Liu H, Zhang Y, Li H, Chen S, Zhang J, Ding W.   +5 more
europepmc   +1 more source