Results 41 to 50 of about 19,493 (242)

Systematic Comparison of Nanopore and Illumina Sequencing for the Detection of Plant Viruses and Viroids Using Total RNA Sequencing Approach

Frontiers in Microbiology, 2022
High-throughput sequencing (HTS) has become an important tool for plant virus detection and discovery. Nanopore sequencing has been rapidly developing in the recent years and offers new possibilities for fast diagnostic applications of HTS.
Anja Pecman, Anja Pecman, Ian Adams, Ion Gutiérrez-Aguirre, Adrian Fox, Neil Boonham, Maja Ravnikar, Denis Kutnjak   +7 more
doaj   +1 more source

Sexual reproduction in invasive Japanese knotweed (Reynoutria japonica) in south Sweden

Nordic Journal of Botany, EarlyView.
To understand the potential for northward expansion of knotweeds into currently uninvaded regions, it is crucial to assess the potential for sexual reproduction alongside the ongoing vegetative spread. For that reason, we tested viability in Reynoutria japonica seeds in south Sweden, a region where viable seeds had not been previously reported ...
Tina D'Hertefeldt, Annette Andersson, Ellen Andersson, Bea Nerer, Mattias West, Alexander Zimmerman   +5 more
wiley   +1 more source

Genome assembly of Vitis rotundifolia Michx. using third-generation sequencing (Oxford Nanopore Technologies)

Труды по прикладной ботанике, генетике и селекции, 2021
The immune North American grapevine species Vitis rotundifolia Michaux (subgen. Muscadinia Planch.) is regarded as a potential donor of disease resistance genes, withstanding such dangerous diseases of grapes as powdery and downy mildews.
M. M. Agakhanov, E. A. Grigoreva, E. K. Potokina, P. S. Ulianich, Y. V. Ukhatova   +4 more
doaj   +1 more source

Nanopore Sequencing for HPV in Oropharyngeal Squamous Cell Carcinoma and Benign Tonsil Specimens

Otolaryngology–Head and Neck Surgery, EarlyView.
Abstract Objectives Human papillomavirus (HPV) accounts for the majority of oropharyngeal squamous cell carcinoma (OPSCC) cases in the United States but understanding the prevalence of high‐risk HPV in oropharyngeal tissue remains poor. We evaluated nanopore sequencing, a novel rapid, and long‐read sequencing platform, on OPSCC tissue and tested it in ...
Mikayla G. Hubbard, Guang‐Sheng Lei, Robert Emerson, Danielle Schreiber, Thomas E. Davis, Diane W. Chen   +5 more
wiley   +1 more source

MinION data fwhF2/fwhR2n (B1=Bulk1, B2=Bulk2, ...)

, 2023
MinION metabarcoding data with fwhF2/fwhR2n ...
Loïs Veillat (16480413)
core   +1 more source

ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone

BMC Biology, 2021
Background DNA barcodes are a useful tool for discovering, understanding, and monitoring biodiversity which are critical tasks at a time of rapid biodiversity loss.
Amrita Srivathsan, Leshon Lee, Kazutaka Katoh, Emily Hartop, Sujatha Narayanan Kutty, Johnathan Wong, Darren Yeo, Rudolf Meier   +7 more
doaj   +1 more source

immunoHuMiX: A personalizable gut‐on‐chip model for unraveling human microbiome–immune interactions

VIEW, EarlyView.
The study introduces a personalized gut model that brings together human immune cells and intestinal cells to better mimic how the body interacts with microbes. This system successfully maintained both human cells and a 17‐strain probiotic community, showing consistent immune responses across different donors.
Charlotte De Rudder, Kacy Greenhalgh, Joanna Baginska, Camille Martin‐Gallausiaux, Léa Grandmougin, Rémy Villette, Mara Lucchetti, Bérénice Hansen, Marek Ostaszewski, Viacheslav A. Petrov, Koji Atarashi, Lena Weidert, Audrey Frachet Bour, Dominik Ternes, Javier Ramiro‐Garcia, Antoine Malabirade, Takeshi Tanoue, Marc Mac Giolla Eain, Elisabeth Letellier, Matthew Barrett, Jérôme Lacombe, Frederic Zenhausern, Coralie Guérin, Markus Ollert, Carole Seguin‐Devaux, Kenya Honda, Paul Wilmes   +26 more
wiley   +1 more source

rDNAmine: A New Tool for the Analysis of Long Repetitive Sequences

Yeast, EarlyView.
This work introduces a novel approach for analysing long repetitive genomic sequences, combining a method to isolate large DNA molecules from individual chromosomes. We also describe the bioinformatics tool rDNAmine, which enables the isolation of long‐repeat sequences from reads obtained using the Oxford Nanopore method, as well as their preliminary ...
Agnieszka Czarnocka‐Cieciura, Natalia Gumińska   +1 more
wiley   +1 more source

Proof of concept for multiplex amplicon sequencing for mutation identification using the MinION nanopore sequencer

Scientific Reports, 2022
Rapid, cost-effective identification of genetic variants in small candidate genomic regions remains a challenge, particularly for less well equipped or lower throughput laboratories.
Whitney Whitford, Victoria Hawkins, Kriebashne S. Moodley, Matthew J. Grant, Klaus Lehnert, Russell G. Snell, Jessie C. Jacobsen   +6 more
doaj   +1 more source

MinION data BF3/BR2 (B1=Bulk1, B2=Bulk2,...)

, 2023
MinION data with BF3/BR2 ...
Loïs Veillat (16480413)
core   +1 more source