Results 171 to 180 of about 120,736 (335)

Identification of Arbuscular Mycorrhizal Fungal Isolates using MiSeq Sequencing

Microbes and Environments
The standardization of strain identification methods is essential for effectively managing the genetic resources of arbuscular mycorrhizal (AM) fungi. Due to their highly polymorphic rRNA sequence and multinucleate nature, conventional strain identification using a single sequence of the rRNA region is often inadequate for these fungi.
openaire   +2 more sources

Rethinking intensification: Biodiversity‐inclusive management sustains coconut yields

PLANTS, PEOPLE, PLANET, EarlyView.
Coconut palm expansion in West Africa will shape rural livelihoods and ecosystems. Our findings show that intensive practices reduce beneficial soil fungi and increase pathogens, threatening long‐term productivity. Lower‐intensity management that retains ground vegetation can sustain or boost yields while improving soil health.
Benjamin J. Roberts, C. M. ( Tilly) Collins, Konan Engueran Djaha, Hamish Duncalf‐Youngson, Konan Jean Louis, Hala N'klo, Emma Ransome, Doubi Bi Tra Serges, Jahcub Trew, Jake Williams, Vincent Savolainen   +10 more
wiley   +1 more source

Variant presenting coverage and variant frequency discrepancies between SeqNext and MiSeq Reporter.

, 2016
Variant presenting coverage and variant frequency discrepancies between SeqNext and MiSeq Reporter.
Aurore Devos (2272672), Franck Broly (2272675), Christelle Willoquaux (2272684), Martin Figeac (2272681), Adrien Pagin (2272678), Guy Lalau (2272669), Maryse Truant (2272687)   +6 more
core   +1 more source

Plant species are more important to bacterial community composition than seeding ratio in a pea‐canola intercropping system

PLANTS, PEOPLE, PLANET, EarlyView.
Demand for agricultural land has increased due to rising demand for food, potentially leading to expansion into previously untouched habitats, which threatens refugia of native plants. We aimed to provide insight into how variation in seeding ratio may impact soil bacterial communities in a pea‐canola intercropping system, potentially altering crop ...
Janice M. Parks, Braeden J. Stiffler, Maren L. Friesen   +2 more
wiley   +1 more source

GenomeTrakr WGS Protocol Collection and Workflow for MiSeq v2

Here we have created a collection of all the protocols used for WGS using the MiSeq, in order, from sample extraction to NCBI submission. This collection has three sections: Section 1: WGS Wet lab workflow for Illumina MiSeq Section 2: Dry lab workflow for sequence QC and NCBI submission - Direct Submission Section 3: Dry lab workflow for sequence ...
Tina Pfefer, Julie Haendiges, Maria Balkey, Candace Bias, Ruth Timme   +4 more
openaire   +1 more source

Incorporating environmental DNA metabarcoding for improved benthic biodiversity and habitat mapping

Remote Sensing in Ecology and Conservation, EarlyView.
Seafloor imagery is commonly used to collect information about the distribution of benthic organisms in order to generate habitat and biodiversity maps. Recent advances in genomics (e.g., environmental DNA; eDNA) show potential to complement video surveys for habitat mapping, but there have been few examples testing this.
Rylan J. Command, Shreya Nemani, Benjamin Misiuk, Mehrdad Hajibabaei, Nicole Fahner, Emily Porter, Greg Singer, Beverly McClenaghan, Katleen Robert   +8 more
wiley   +1 more source

Optimization of HIV Sequencing Method Using Vela Sentosa Library on Miseq Ilumina Platform

Genotypic testing is often recommended to improve the management of patients infected with human immunodeficiency virus (HIV). To help combat this major pandemic, next-generation sequencing (NGS) techniques are widely used to analyse resistance to ...
Olfa Zanzouri, Solen Daugabel, Cécile Fernand-Laurent, Stéphanie Marque Juillet, Nasserdine Papa Mze   +4 more
core   +1 more source

MiSeq raw sequences of the COI minibarcode from 24 positive controls and 58 negative controls

, 2017
This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each faecal pellet in triplicate using the MiSeq platform. The 1162 multiplexed PCR products were indexed using both forward and reverse indices.
Orianne Tournayre (7069220), Maxime Leuchtmann (5470973), Pontier, Dominique, Tournayre, Orianne, Maxime Galan (121052), Dominique Pontier (163631), Pierre, Eric, Jean-Baptiste Pons (5997833), Charbonnel, Nathalie, Pons, Jean-Baptiste, Eric Pierre (572382), Leuchtmann, Maxime, Galan, Maxime, Nathalie Charbonnel (784330)   +13 more
core   +1 more source

Structure and functional genes associated with carbon, nitrogen, phosphorus, and sulfur cycling processes in periphyton: A comparison between natural and artificial rivers

River, EarlyView.
Network analysis of functional genes among prokaryotes, and eukaryotes in natural and artificial rivers. Abstract Periphyton in aquatic ecosystems plays vital roles in the elemental cycle process and is vulnerable to anthropogenic interference. However, few studies have explored the elemental cycles of carbon (C), nitrogen (N), phosphorus (P), and ...
Yulu Tian, Jiezhang Mo, Jiaxin Liu, Chenghao Li, Jiahua Guo   +4 more
wiley   +1 more source

MiSeq raw sequences of the COI minibarcode from arthropod mock communities MC1 & MC2

, 2017
This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced using the MiSeq platform for each individual PCR and the pools of the arthropod mock communities in triplicate.
Orianne Tournayre (7069220), Maxime Leuchtmann (5470973), Pontier, Dominique, Tournayre, Orianne, Maxime Galan (121052), Dominique Pontier (163631), Pierre, Eric, Jean-Baptiste Pons (5997833), Charbonnel, Nathalie, Pons, Jean-Baptiste, Eric Pierre (572382), Leuchtmann, Maxime, Galan, Maxime, Nathalie Charbonnel (784330)   +13 more
core   +1 more source