Results 111 to 120 of about 1,038,801 (318)

The human gut microbiome across the life course

open access: yesFEBS Letters, EarlyView.
Despite significant individual variation and continuous change throughout life, the human gut microbiome follows some life stage‐specific trends. This article provides a brief overview of how gut microbiome composition shifts across different phases of life. Created in BioRender. Özkurt, E. (2026) https://BioRender.com/8q4nrnc.
Alise J. Ponsero   +4 more
wiley   +1 more source

Pressure-Area Isotherm of a Lipid Monolayer from Molecular Dynamics Simulations [PDF]

open access: yes, 2007
We calculated the pressure-area isotherm of a dipalmitoyl-phosphatidylcholine (DPPC) lipid monolayer from molecular dynamics simulations using a coarse-grained molecular model.
Marrink, Siewert J.,   +8 more
core   +1 more source

Septin 9 PB domains coordinate centrosome positioning and microtubule acetylation to control epithelial polarity

open access: yesFEBS Letters, EarlyView.
Septin 9 polybasic domains couple phosphoinositide‐rich membrane binding to centrosome positioning, Golgi organization, and microtubule acetylation to control epithelial polarity. Their loss disrupts this axis, causing centrosome mispositioning, Golgi fragmentation, reduced microtubule acetylation, and polarity inversion via upregulation of the ...
Ting ting Cai   +4 more
wiley   +1 more source

Molecular dynamics simulations of complex systems including HIV-1 protease

open access: yes, 2010
Advances in supercomputer architectures have resulted in a situation where many scienti fic codes are used on systems whose performance characteristics di ffer considerably from the platform they were developed and optimised for.
Kenway, O.A., Kenway, OA
core  

Molecular dynamics for fluid mechanics in arbitrary geometries

open access: yes, 2008
Simulations of nanoscale systems where fluid mechanics plays an important role are required to help design and understand nano-devices and biological systems.
Reese, Jason M.   +5 more
core   +1 more source

Role of charge and hydrophobicity in liprotide formation:A molecular dynamics study with experimental constraints [PDF]

open access: yes, 2018
Bovine α-lactalbumin (aLA) and oleate (OA) form a complex that has been intensively studied for its tumoricidal activity. Small-angle X-ray scattering (SAXS) has revealed a lipid core surrounded by partially unfolded protein. We call this type of complex
Nedergaard Pedersen, Jannik   +10 more
core   +1 more source

Degradation mechanism of the von Willebrand factor A2 domain by nattokinase

open access: yesFEBS Letters, EarlyView.
Nattokinase, a natto‐derived protease, exhibits potent antithrombotic effects. This study demonstrates that nattokinase directly cleaves the von Willebrand factor (vWF) A2 domain in vitro. Unlike the native regulator ADAMTS13, nattokinase degrades folded vWF independently of shear stress.
Ryuichi Hyakumoto   +3 more
wiley   +1 more source

Do Osmolytes Impact the Structure and Dynamics of Myoglobin?

open access: yesMolecules, 2018
Osmolytes are small organic compounds that can affect the stability of proteins in living cells. The mechanism of osmolytes’ protective effects on protein structure and dynamics has not been fully explained, but in general, two possibilities have ...
Dorota Kossowska   +2 more
doaj   +1 more source

Classical molecular dynamics [PDF]

open access: yesThe Journal of Chemical Physics, 2021
Charles L. Brooks   +5 more
openaire   +2 more sources

cgHeliParm:analysis of dsDNA helical parameters for coarse-grained MARTINI molecular dynamics simulations [PDF]

open access: yes, 2017
Summary: We introduce cgHeliParm, a python program that provides the conformational analysis of Martini-based coarse-grained double strand DNA molecules. The software calculates the helical parameters such as base, base pair and base pair step parameters.
Marrink, S. J.; id_orcid   +4 more
core   +1 more source

Home - About - Disclaimer - Privacy