Results 51 to 60 of about 382,917 (268)

Interpreting the effects of DNA polymerase variants at the structural level

Molecular Oncology, EarlyView.
Using MAVISp and molecular dynamics simulations, we analyzed over 60 000 missense variants in POLE and POLD1 from ClinVar, COSMIC, cBioPortal, and saturation mutagenesis. Identified mechanistic indicators, including stability, binding, and long‐range, enable structural interpretation, providing ACMG‐like evidence for possible reclassification of VUS ...
Matteo Arnaudi, Karolina Krzesińska, Ludovica Beltrame, Pablo Sánchez‐Izquierdo Besora, Matteo Tiberti, Mef Nilbert, Anna Rohlin, Elena Papaleo   +7 more
wiley   +1 more source

Integrated qualitativeness in design by multi-objective optimization and interactive evolutionary computation. [PDF]

, 2005
- The concept of qualitativeness in design is an important one, and needs to be incorporated in the optimization process for a number of reasons outlined in this paper.
Ramsden, Jeremy, Tiwari, Ashutosh, Brintrup, Alexandra Melike, Ramsden, Jeremy J., Brintrup, Alexandra   +4 more
core  

Multi-objective new product development by complete Pareto front and ripple-spreading algorithm [PDF]

, 2014
Given several different new product development projects and limited resources, this paper is concerned with the optimal allocation of resources among the projects.
Hu, Xiao-Bing, Leeson, Mark S., Han, Zhangan, Ye, Qian, Wang, Ming   +4 more
core   +1 more source

Multi objective elk herd optimization for efficient structural design

Scientific Reports
This research presents an advancement of the Elk Herd Optimization targeting specific real-world multi-objective optimization problems, this algorithm is stated as the multi-objective Elk Herd Optimization (MOEHO).
Pinank Patel, Divya Adalja, Nikunj Mashru, Pradeep Jangir, Arpita, Reena Jangid, Gulothungan G, Mohammad Khishe   +7 more
doaj   +1 more source

Liquid biopsy‐based diagnostic evaluation of hypermethylated CpG sites for ovarian cancer diagnosis

Molecular Oncology, EarlyView.
This schematic outlines the workflow from biomarker identification to duplex MethyLight assay validation for epithelial ovarian cancer diagnosis using cfDNA‐based liquid biopsy. Initial screening of hypermethylated CpG candidates (cg02957270, cg10061138 cg00480298, COL2A1) was performed in tissue using ARMS‐PCR, COBRA, qPCR and image analysis. Selected
Deepa Bisht, Sameer Gupta, Amrita Chaurasia, Manisha Sachan   +3 more
wiley   +1 more source

Patient therapy outcome modeling in cancer organoids is improved by cancer‐associated fibroblasts and organoid assembly convolution

Molecular Oncology, EarlyView.
Patient‐derived organoids (PDOs) from pancreatic, colorectal, and gastric cancers were used to evaluate standard and experimental therapies. Incorporating cancer‐associated fibroblasts (CAFs) into organoid cultures improved patient therapy outcome prediction.
Marcin Grochowski, Liudmyla Dolinchuk, Michał Jerzak, Albert Gandurski, Tomasz Grochowski, Weronika Wojtyś, Maciej Zadrożny, Wojciech Kaźmierczak, Małgorzata Lenarcik, Marta Matejak‐Górska, Radosław Samsel, Tomasz Olesiński, Dawid Walerych   +12 more
wiley   +1 more source

Mycobacterial cell division arrest and smooth‐to‐rough envelope transition using CRISPRi‐mediated genetic repression systems

FEBS Open Bio, EarlyView.
CRISPRI‐mediated gene silencing and phenotypic exploration in nontuberculous mycobacteria. In this Research Protocol, we describe approaches to control, monitor, and quantitatively assess CRISPRI‐mediated gene silencing in M. smegmatis and M. abscessus model organisms.
Vanessa Point, Wafaa Achache, Janïs Laudouze, Eliana Sepulveda Ramos, Mickaël Maziero, Céline Crauste, Stéphane Canaan, Pierre Santucci   +7 more
wiley   +1 more source

A guided search non-dominated sorting genetic algorithm for the multi-objective university course timetabling problem [PDF]

, 2011
Copyright @ Springer-Verlag Berlin Heidelberg 2011.The university course timetabling problem is a typical combinatorial optimization problem. This paper tackles the multi-objective university course timetabling problem (MOUCTP) and proposes a guided ...
Yang, S, Shengxiang Yang, Jat, SN, Sadaf Naseem Jat, Yang, Shengxiang, Jat, Sadaf Naseem   +5 more
core   +1 more source

A Multi-Objective Carnivorous Plant Algorithm for Solving Constrained Multi-Objective Optimization Problems

Biomimetics, 2023
Satisfying various constraints and multiple objectives simultaneously is a significant challenge in solving constrained multi-objective optimization problems.
Yufei Yang, Changsheng Zhang
doaj   +1 more source

Chameleon sequences reveal structural effects in proteins representing micelle‐like distribution of hydrophobicity

FEBS Open Bio, EarlyView.
Amino acids sequence of two different proteins with the same sequence (chameleon sequence—black boxes) represent in 3D structure of the proteins different secondary structures: HHHH—helical and BBB—Beta‐structural. The chains folded in water environment adopt different III‐order structures in which the chameleon fragments appear to adopt similar status
Irena Roterman, Katarzyna Stapor, Leszek Konieczny, Krzysztof Gądek, Piotr Nowakowski   +4 more
wiley   +1 more source