Results 121 to 130 of about 723,948 (277)

A format for phylogenetic placements [PDF]

, 2012
We have developed a unified format for phylogenetic placements, that is, mappings of environmental sequence data (e.g. short reads) into a phylogenetic tree. We are motivated to do so by the growing number of tools for computing and post-processing phylogenetic placements, and the lack of an established standard for storing them.
arxiv   +1 more source

High diversity of Phytophthora species in natural ecosystems and nurseries of Portugal: Detrimental side effect of plant introductions from the age of discovery to modern globalization

Plant Pathology, Volume 74, Issue 2, Page 330-362, February 2025.
High diversity of known and new, mostly exotic Phytophthora species in forests, nurseries and streams across Portugal and numerous associated forest tree declines are a consequence of long‐term plant introductions and outplantings. Abstract Between 2010 and 2015, an extensive survey of Phytophthora diversity was performed across Portugal.
Marília Horta Jung, Cristiana Maia, Beatriz Mora‐Sala, Paloma Abad‐Campos, Leonardo Schena, Saveria Mosca, Giuseppe Carella, Salvatore Moricca, Jan Nechwatal, Lídia Dionísio, Alfredo Cravador, Thomas Jung   +11 more
wiley   +1 more source

Evidence for 5S rDNA Horizontal Transfer in the toadfish Halobatrachus didactylus (Schneider, 1801) based on the analysis of three multigene families [PDF]

, 2012
Background The Batrachoididae family is a group of marine teleosts that includes several species with more complicated physiological characteristics, such as their excretory, reproductive, cardiovascular and respiratory systems.
Cross, Ismael, Merlo, Manuel A., Palazón Fernández, José Luis, Rebordinos, Laureana, Sarasquete, Carmen, Úbeda-Manzanaro, María   +5 more
core   +2 more sources

Pythium banihashemianum sp. nov. and Globisporangium izadpanahii sp. nov.: Two New Oomycete Species from Rice Paddies in Iran

Journal of Fungi
An investigation into oomycete diversity in rice paddies of Fars Province in Iran led to the identification of two new Pythium sensu lato (s.l.) species as Globisporangium izadpanahii sp. nov. and Pythium banihashemianum sp. nov.
Fatemeh Salmaninezhad, Reza Mostowfizadeh-Ghalamfarsa, Santa Olga Cacciola   +2 more
doaj   +1 more source

Autophagy restricts tomato fruit ripening via a general role in ethylene repression

New Phytologist, Volume 246, Issue 6, Page 2392-2404, June 2025.
Girishkumar Kumaran, Pradeep Kumar Pathak, Ebenezer Quandoh, Jyoti Devi, Sergey Mursalimov, Sharon Alkalai‐Tuvia, Jia Xuan Leong, Kyrylo Schenstnyi, Elena Levin, Suayib Üstün, Simon Michaeli   +10 more
wiley   +1 more source

Multiple Phytophthora species associated with declining wild olive trees in Sardinia, Italy

Plant Pathology, Volume 74, Issue 2, Page 465-475, February 2025.
This study provides new insights into the role of multiple Phytophthora species associated with widespread and severe decline of wild olive trees in Sardinia (Italy). Abstract Wild olive represents one of the most iconic woody plants in the Mediterranean Basin.
Antonio Deidda, Gabriele G. A. Satta, Andrea Brandano, Camilla Morittu, Davide Mureddu, Bruno Scanu   +5 more
wiley   +1 more source

GPTIPS 2: an open-source software platform for symbolic data mining [PDF]

arXiv, 2014
GPTIPS is a free, open source MATLAB based software platform for symbolic data mining (SDM). It uses a multigene variant of the biologically inspired machine learning method of genetic programming (MGGP) as the engine that drives the automatic model discovery process.
arxiv  

The Medicago truncatula LYR4 intracellular domain serves as a scaffold in immunity signaling independent of its phosphorylation activity

New Phytologist, Volume 246, Issue 4, Page 1423-1431, May 2025.
Bine Simonsen, Henriette Rübsam, Marie Vogel Kolte, Maria Meisner Larsen, Christina Krönauer, Kira Gysel, Mette Laursen, Feng Feng, Gülendam Kaya, Giles E. D. Oldroyd, Jens Stougaard, Sébastien Fort, Simona Radutoiu, Kasper Røjkjær Andersen   +13 more
wiley   +1 more source

Molecular Insights Into the Sensory Adaption of the Cave‐Dwelling Leech Sinospelaeobdella wulingensis to the Karst Cave Environment

Ecology and Evolution, Volume 15, Issue 1, January 2025.
We conducted a transcriptome analysis on the cave‐dwelling land leech Sinospelaeobdella wulingensis. Piezos, TRPs, and iGluRs may have roles in mechanosensory and chemosensory systems of this leech. Similar gene expression profiles in winter and summer samples imply a stable physiological status of S.
Xi Wen, Haiyang Xiang, Mengqing Zhang, Aoran Yan, Dongqing Xiang, Jie Zou, Yue Zhang, Xinglong Huang, Zhixiao Liu   +8 more
wiley   +1 more source

Long-term evolution of 5S ribosomal DNA seems to be driven by birth-and-death processes and selection in "Ensis" razor shells (Mollusca: Bivalvia) [PDF]

, 2009
[Abstract] A study of nucleotide sequence variation of 5S ribosomal DNA from six Ensis species revealed that several 5S ribosomal DNA variants, based on differences in their nontranscribed spacers (NTS), occur in Ensis genomes.
González-Tizón, Ana M., Martínez-Lage, Andrés, Vierna Fernández, Joaquín   +2 more
core   +2 more sources