Results 111 to 120 of about 429,505 (261)

Multiple Sequence Alignment Tools on the Web

BioTechniques, 2000
Giles J. Gaskell
doaj   +1 more source

ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process. [PDF]

BMC Bioinformatics, 2021
Maiolo M, Gatti L, Frei D, Leidi T, Gil M, Anisimova M.   +5 more
europepmc   +1 more source

Pro-malign: Multiple Sequence Alignment Algorithm using Approached Profile [PDF]

, 2018
Ahmed Mokaddem, Amine Bel Haj, Mourad Elloumi   +2 more
openalex   +1 more source

Teaching Python with team‐based learning: using cloud‐based notebooks for interactive coding education

FEBS Open Bio, EarlyView.
This study presents a novel approach to teaching Python and bioinformatics using team‐based learning and cloud‐hosted notebooks. By integrating interactive coding into biomedical education, the method improves accessibility, student engagement, and confidence—especially for those without a computing background.
Nuno S. Osório, Leonardo D. Garma
wiley   +1 more source

PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment. [PDF]

Bioinformatics, 2022
Yeh CC, Amorosi CJ, Showman S, Dunham MJ.   +3 more
europepmc   +1 more source

Phosphomimetic mutations near active sites of proteins in Thermus thermophilus suggest a widespread regulatory mechanism

FEBS Open Bio, EarlyView.
In Thermus thermophilus, more than half of the phosphorylation sites identified by proteomic analysis are located near the active site. All phosphomimetic mutants of phosphosites of six enzymes belonging to different families showed severely reduced activity compared with the wild‐type, particularly in the turnover number.
Anzu Nishiwaki, Hiroki Okanishi, Yoshikatsu Kanai, Ryoji Masui   +3 more
wiley   +1 more source

Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty. [PDF]

BMC Ecol Evol, 2021
Spielman SJ, Miraglia ML.
europepmc   +1 more source

Liquid-theory analogy of direct-coupling analysis of multiple-sequence alignment and its implications for protein structure prediction

, 2015
Akira R. Kinjo
openalex   +2 more sources

Transcriptional regulation of neuropeptide receptors underlies context‐dependent adaptation in Drosophila melanogaster

FEBS Open Bio, EarlyView.
Under environmental changes, the expression level of neuropeptide (NP) and neuropeptide receptor (NPR) genes changes to confer context‐dependent adaptation to the model organism Drosophila melanogaster. Through finding more regulatory elements in the NPR genes in comparison with their ligands (NPs), we found that NPR‐biased transcriptional regulation ...
SeungHeui Ryu, Yanan Wei, Zekun Wu, Tianmu Zhang, DoHoon Lee, Hadi Najafi, Woo Jae Kim   +6 more
wiley   +1 more source

A unified model for Duchenne muscular dystrophy gene involvement in cancer: context‐dependent tumour suppression and oncogenicity

FEBS Open Bio, EarlyView.
We propose a context‐dependent model where the Duchenne muscular dystrophy (DMD) gene acts as a tumour suppressor in aggressive tumours and as an oncogene in less aggressive ones. We propose this model as a unified framework to explain the opposing survival associations with DMD expression and to guide experimental exploration of the dual role of DMD ...
Lee Machado, Leanne Jones, Sonika Divakar, Michael Naidoo, Karen Anthony   +4 more
wiley   +1 more source