Results 191 to 200 of about 1,526,772 (381)
Study of the error correction capability of multiple sequence alignment algorithm (MAFFT) in DNA storage. [PDF]
BMC Bioinformatics, 2023 Xie R, Zan X, Chu L, Su Y, Xu P, Liu W.
europepmc +1 more source
Phylogenetic automata, pruning, and multiple alignment [PDF]
arXiv, 2011 We present an extension of Felsenstein's algorithm to indel models defined on entire sequences, without the need to condition on one multiple alignment. The algorithm makes use of a generalization from probabilistic substitution matrices to weighted finite-state transducers.
arxiv
TOPAL 2.0: improved detection of mosaic sequences within multiple alignments [PDF]
, 2000 Gráinne McGuire, Frank Wright
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FEBS Open Bio, EarlyView.We investigated a potential protective effect of acacetin, a naturally occurring flavonoid, against methylglyoxal (MGO)‐induced endothelial dysfunction in human umbilical vein endothelial cells and its mechanism of action. Acacetin can could inhibit MGO‐induced intracellular calcium ion influx, enhance the expression levels of phosphorylated ...
Zhen Zhang +7 more
wiley +1 more source
Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families. [PDF]
NAR Genom Bioinform, 2022 Hubley R, Wheeler TJ, Smit AFA.
europepmc +1 more source
An iterative method for faster sum-of-pairs multiple sequence alignment [PDF]
, 2000 Knut Reinert, Jens Stoye, Torsten Will
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FEBS Open Bio, EarlyView.Measuring AMP‐activated protein kinase (AMPK) activity in vitro is crucial for testing AMPK activators or inhibitors with therapeutic potential. Here, we report an enzyme‐linked immunosorbent assay (ELISA)‐based AMPK activity assay with simple steps and high sensitivity, which offers a simple, robust, and cost‐effective alternative to traditional ...
Trezze P. Nguyen, Shangze Lyu, Yang Liu
wiley +1 more source
Parallel DNA Sequence Alignment on High-Performance Systems with CUDA and MPI [PDF]
arXivSequence alignment is a cornerstone of bioinformatics, widely used to identify similarities between DNA, RNA, and protein sequences and studying evolutionary relationships and functional properties. The Needleman-Wunsch algorithm remains a robust and accurate method for global sequence alignment.
arxiv
The Practical Use of the A* Algorithm for Exact Multiple Sequence Alignment [PDF]
, 2000 Martin Lermen, Knut Reinert
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FEBS Open Bio, EarlyView.The tumor microenvironment is a dynamic, multifaceted complex system of interdependent cellular, biochemical, and biophysical components. Three‐dimensional in vitro models of the tumor microenvironment enable a better understanding of these interactions and their impact on cancer progression and therapeutic resistance.
Salma T. Rafik +3 more
wiley +1 more source