Results 211 to 220 of about 1,526,772 (381)

Enhanced discovery of bacterial laccase‐like multicopper oxidase through computer simulation and metagenomic analysis of industrial wastewater

FEBS Open Bio, EarlyView.
We obtained potential bacterial laccase‐like multicopper oxidase (LMCO) sequences through metagenomic sequencing. All sequences exhibited significant differences from known LMCOs in databases. To select the most promising candidates, we performed structure prediction and molecular docking using alphafold2, metal3d and rosetta.
Ting Cui, Ariel Kushmaro, Hana Barak, Anja Poehlein, Rolf Daniel, Hans‐Jürgen Mägert   +5 more
wiley   +1 more source

Sequence Flow: interactive web application for visualizing partial order alignments

BMC Genomics
Background Multiple sequence alignment (MSA) has proven extremely useful in computational biology, especially in inferring evolutionary relationships via phylogenetic analysis and providing insight into protein structure and function.
Krzysztof Zdąbłasz, Anna Lisiecka, Norbert Dojer   +2 more
doaj   +1 more source

PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment. [PDF]

Bioinformatics, 2022
Yeh CC, Amorosi CJ, Showman S, Dunham MJ.   +3 more
europepmc   +1 more source

Improving performance of multiple sequence alignment analysis in multi-client environments [PDF]

, 2002
Ümit V. Çatalyürek, Eric Stahlberg, Renato Ferreira, Tahsin Kurç, Joel Saltz   +4 more
openalex   +1 more source

Introduction to Multiple Sequence Alignment

, 2013
An introduction to multiple sequence alignments (MSAs) for bench biologists delivered as part of the EMBL Australia Masterclass on Protein Sequence Analysis http://oz-masterclass.wikispaces.com/ . Focuses on describing: the "anatomy" of a sequence alignment; two alternative interpretations of alignmetns (structural and evolutionary), and ways of ...
openaire   +2 more sources

Comparative study of adenosine 3′‐pyrophosphokinase domains of MuF polymorphic toxins

FEBS Open Bio, EarlyView.
With the ultimate goal of understanding the association of toxin‐immunity modules to temperate phages, we characterized toxins from three prophages and examined cross‐protection from immunity proteins. The toxins exhibit adenosine 3′‐pyrophosphokinase activity and are toxic in Escherichia coli.
Eloïse M. Paulet, Julia Bartoli, Atakan Kabtan, Chloé M. Piras, Audrey C. Tempier, Eric Cascales, Julie P. Viala   +6 more
wiley   +1 more source

Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty. [PDF]

BMC Ecol Evol, 2021
Spielman SJ, Miraglia ML.
europepmc   +1 more source

Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics [PDF]

, 2002
Ernst Althaus, Alberto Caprara, Hans‐Peter Lenhof, Knut Reinert   +3 more
openalex   +1 more source

KCS1 and VIP1, the genes encoding yeast phosphoinositol pyrophosphate synthases, are required for Ca2+‐mediated response to dimethylsulfoxide (DMSO)

FEBS Open Bio, EarlyView.
Ca2+‐mediated response to DMSO was investigated in Saccharomyces cerevisiae cells expressing Ca2+‐dependent aequorin. Cell exposure to DMSO induced a cytosolic Ca2+ wave dependent on the integrity of the Cch1/Mid1 channel. Deletion of KCS1 or VIP1 genes encoding the phosphoinositol pyrophosphate (PP‐IP) synthases suppressed the DMSO‐induced Ca2 ...
Larisa Ioana Gogianu, Lavinia Liliana Ruta, Claudia Valentina Popa, Simona Ghenea, Ileana Cornelia Farcasanu   +4 more
wiley   +1 more source

Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method

, 1996
Thomas D. Schneider, David N. Mastronarde   +1 more
openalex   +1 more source