Combining multiple structure and sequence alignments to improve sequence detection and alignment: Application to the SH2 domains of Janus kinases [PDF]
, 2001 Bissan Al‐Lazikani +2 more
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Multiple sequence alignment with hierarchical clustering
Nucleic Acids Research, 1988 An algorithm is presented for the multiple alignment of sequences, either proteins or nucleic acids, that is both accurate and easy to use on microcomputers. The approach is based on the conventional dynamic-programming method of pairwise alignment.
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Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families. [PDF]
NAR Genom Bioinform, 2022 Hubley R, Wheeler TJ, Smit AFA.
europepmc +1 more source
Automatic Discovery of Sub-molecular Sequence Domains in Multi-aligned Sequences: A Dynamic Programming Algorithm for Multiple Alignment Segmentation [PDF]
, 2001 Eric Poe Xing +6 more
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Multiple sequence alignment using partial order graphs [PDF]
, 2002 Christopher Lee +2 more
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Introduction to Multiple Sequence Alignment
, 2013 An introduction to multiple sequence alignments (MSAs) for bench biologists delivered as part of the EMBL Australia Masterclass on Protein Sequence Analysis http://oz-masterclass.wikispaces.com/ . Focuses on describing: the "anatomy" of a sequence alignment; two alternative interpretations of alignmetns (structural and evolutionary), and ways of ...
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Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
BMC Bioinformatics, 2012 Background Transmembrane proteins (TMPs) constitute about 20~30% of all protein coding genes. The relative lack of experimental structure has so far made it hard to develop specific alignment methods and the current state of the art (PRALINE™) only ...
Chang Jia-Ming +3 more
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MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences. [PDF]
Bioinformatics, 2022 Shen C, Zaharias P, Warnow T.
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Improving performance of multiple sequence alignment analysis in multi-client environments [PDF]
, 2002 Ümit V. Çatalyürek +4 more
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MAGUS: Multiple sequence Alignment using Graph clUStering. [PDF]
Bioinformatics, 2021 Smirnov V, Warnow T.
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