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Multiscale Computing with the Multiscale Modeling Library and Runtime Environment
Procedia Computer Science, 2013 AbstractWe introduce a software tool to simulate multiscale models: the Multiscale Coupling Library and Environment 2 (MUSCLE 2). MUSCLE 2 is a component-based modeling tool inspired by the multiscale modeling and simulation framework, with an easy-to-use API which supports Java, C++, C, and Fortran.
Derek Groen +2 more
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Multiscale models of thrombogenesis
WIREs Systems Biology and Medicine, 2012AbstractTo restrict the loss of blood follow from the rupture of blood vessels, the human body rapidly forms a clot consisting of platelets and fibrin. However, to prevent pathological clotting within vessels as a result of vessel damage, the response must be regulated.
Zhiliang, Xu +4 more
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Multiscale Modeling of Insulin Secretion
IEEE Transactions on Biomedical Engineering, 2011Insulin secretion from pancreatic beta cells is a fundamental physiological process, and its impairment plays a pivotal role in the development of diabetes. Mathematical modeling of insulin secretion has a long history, both on the level of the entire body and on the cellular and subcellular scale.
PEDERSEN, MORTEN GRAM +2 more
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2012
We review the basic theoretical principles of the adaptive resolution simulation scheme (AdResS). This method allows to change molecular resolution on-the-fly during a simulation by changing the number of degrees of freedom in specific regions of space where the required resolution is higher than in the rest of the system.
Matej, Praprotnik, Luigi, Delle Site
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We review the basic theoretical principles of the adaptive resolution simulation scheme (AdResS). This method allows to change molecular resolution on-the-fly during a simulation by changing the number of degrees of freedom in specific regions of space where the required resolution is higher than in the rest of the system.
Matej, Praprotnik, Luigi, Delle Site
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Multiscale Modeling of Proteins
Accounts of Chemical Research, 2009The activity within a living cell is based on a complex network of interactions among biomolecules, exchanging information and energy through biochemical processes. These events occur on different scales, from the nano- to the macroscale, spanning about 10 orders of magnitude in the space domain and 15 orders of magnitude in the time domain ...
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Mathematical Models and Methods in Applied Sciences, 2002
We derive a system of kinetic equations which realize the Broadwell model on a variety of scales. For a 16-velocity model we verify constraints giving rise to "realistic" Euler equations. Applications to rarefied flow dynamics are developed.
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We derive a system of kinetic equations which realize the Broadwell model on a variety of scales. For a 16-velocity model we verify constraints giving rise to "realistic" Euler equations. Applications to rarefied flow dynamics are developed.
openaire +2 more sources
Multiscale modeling of polyisoprene on graphite
The Journal of Chemical Physics, 2014The local dynamics and the conformational properties of polyisoprene next to a smooth graphite surface constructed by graphene layers are studied by a multiscale methodology. First, fully atomistic molecular dynamics simulations of oligomers next to the surface are performed.
Yogendra Narayan, Pandey +4 more
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Multiscale ARX Process Modeling
Proceedings of the 45th IEEE Conference on Decision and Control, 2006Multiscale wavelet-based representation of data has been shown to be a powerful tool in feature extraction from practical process data. In this paper, this characteristic of multiscale representation is utilized to improve the prediction accuracy of the popular linear auto-regressive with exogenous variable (ARX) model by developing a multiscale ARX ...
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Multiscale measurements for materials modeling
Science, 2017Tracking defect motion in polycrystalline materials can help model emergent ...
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