Results 11 to 20 of about 744,325 (256)

MDM-TASK-web: MD-TASK and MODE-TASK web server for analyzing protein dynamics

open access: yesComputational and Structural Biotechnology Journal, 2021
The web server, MDM-TASK-web, combines the MD-TASK and MODE-TASK software suites, which are aimed at the coarse-grained analysis of static and all-atom MD-simulated proteins, using a variety of non-conventional approaches, such as dynamic residue network
Olivier Sheik Amamuddy   +3 more
doaj   +1 more source

Variable thermal conductivity in micropolar thermoelastic medium without energy dissipation possessing cubic symmetry

open access: yesInternational Journal of Applied Mechanics and Engineering, 2023
This investigation deals with the effect of variable thermal conductivity in a micropolar thermoelastic medium without energy dissipation with cubic symmetry.
Praveen Ailawalia, - Priyanka
doaj   +1 more source

DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images

open access: yesFrontiers in Molecular Biosciences, 2022
Single-particle cryo-electron microscopy (cryo-EM) is a technique for biomolecular structure reconstruction from vitrified samples containing many copies of a biomolecular complex (known as single particles) at random unknown 3D orientations and ...
Ilyes Hamitouche, Slavica Jonic
doaj   +1 more source

Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods

open access: yesFrontiers in Molecular Biosciences, 2022
Recent years have seen several hybrid simulation methods for exploring the conformational space of proteins and their complexes or assemblies. These methods often combine fast analytical approaches with computationally expensive full atomic molecular ...
Burak T. Kaynak   +11 more
doaj   +1 more source

Normal Mode Analysis for Connected Plate Structure Using Efficient Mode Polynomials with Component Mode Synthesis

open access: yesApplied Sciences, 2020
In the engine room and stern adjacent to the main excitation force of the ship, there are many fuel and fresh water tank structures required for ship operation which are always exposed to vibrations.
Jeong-Hee Park, Jae-Hyoung Yang
doaj   +1 more source

Plane strain problem in a rotating microstretch thermoelastic solid with microtemperatures [PDF]

open access: yesTheoretical and Applied Mechanics, 2017
A two-dimensional problem in an infinite microstretch thermoelastic solid with microtemperatures subjected to a mechanical source is studied. The medium is rotating with a uniform angular velocity →Ω.
Ailawalia Praveen   +2 more
doaj   +1 more source

Two-Dimensional Analysis of Functionally Graded Thermoelastic Microelongated Solid

open access: yesInternational Journal of Applied Mechanics and Engineering, 2022
The present research focuses on two-dimensional deformation in a functionally graded thermoelastic micro-elongated medium. It is supposed that the non-homogeneous properties (thermal and mechanical) of FGM are in the x-direction.
Anchal Sharma, Praveen Ailawalia
doaj   +1 more source

Comparative Analysis of Structural and Dynamical Features of Ribosome Upon Association With mRNA Reveals Potential Role of Ribosomal Proteins

open access: yesFrontiers in Molecular Biosciences, 2021
Ribosomes play a critical role in maintaining cellular proteostasis. The binding of messenger RNA (mRNA) to the ribosome regulates kinetics of protein synthesis.
Sneha Bheemireddy   +2 more
doaj   +1 more source

Instantaneous Normal Mode Analysis of Liquid HF [PDF]

open access: yesPhysical Review Letters, 2000
REVTeX, 7 pages, 5 eps figures included. Minor changes in the text and in a figure. Accepted for publication in Phys.
Garberoglio, Giovanni, R. Vallauri
openaire   +4 more sources

Deciphering the Mechanism of Inhibition of SERCA1a by Sarcolipin Using Molecular Simulations

open access: yesFrontiers in Molecular Biosciences, 2021
SERCA1a is an ATPase calcium pump that transports Ca2+ from the cytoplasm to the sarco/endoplasmic reticulum lumen. Sarcolipin (SLN), a transmembrane peptide, regulates the activity of SERCA1a by decreasing its Ca2+ transport rate, but its mechanism of ...
Thomas Barbot   +6 more
doaj   +1 more source

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